DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_OENHY (Cytochrome c oxidase subunit 2 OS=Oenomys hypoxanthus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTTDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HAPGR (Cytochrome c oxidase subunit 2 OS=Hapalemur griseus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 58/148 (39.19%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDAA+P+M+                        V  +         +    +    +E +WTI P+ IL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     ++L FDSYM+P  DL+ G+LRLL V
Sbjct:    2 AYPVQLGFQDAASPIME-----ELLYFHDHTLMIMFLISSLVLYIISLMLTTELMHTNTMDAQEVETVWTILPAAILILIALPSLRILYMMDEITT-PSLTLKTMGHQWYWSYEYTDY-----ENLCFDSYMVPSSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_GERGE (Cytochrome c oxidase subunit 2 OS=Gerbillus gerbillus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA++P+M+                           L            +++H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP ++L+ G+LRLL V
Sbjct:    2 AYPFQLGLQDASSPIMEELMNFHDHTLMIVFLISSLVLYLMALML----------STKLIHTSTMDAQEVETIWTILPAIILIMIALPSLRILYMMDEIN-NPILTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DASNO (Cytochrome c oxidase subunit 2 OS=Dasypus novemcinctus GN=MT-CO2 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 60/151 (39.74%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  222 PWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            P QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +TIKA+GHQWYW+YEY+DY     + L FDSYM+P  DL+ G+LRLL V
Sbjct:    4 PLQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIITLML----------TTKLTHTSTMDAQEVETVWTILPAVILILIALPSLRILYMMDEIN-NPLLTIKAMGHQWYWSYEYTDY-----EDLNFDSYMVPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CAVAP (Cytochrome c oxidase subunit 2 OS=Cavia aperea GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA++P+M+                           L            ++ H +T     IE +WTI P+IIL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     + L FDSYM+P  DL+ G+LRLL V
Sbjct:    2 AYPYELGFQDASSPIMEELLHFHDHTLMIVFLISTLVLYLITIML----------TTKLTHTSTMDAQEIETIWTILPAIILILIALPSLRILYMMDEIN-SPSLTVKTMGHQWYWSYEYTDY-----EELSFDSYMVPTMDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PSECP (Cytochrome c oxidase subunit 2 OS=Pseudalopex culpaeus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+LG+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKLGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_POLOR (Cytochrome c oxidase subunit 2 OS=Polypterus ornatipinnis GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 59/146 (40.41%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLG QDA++P+M+                        + A+           + ++    IEI+WT+ P+++L+ IA+PS  +LY MDE+  DP +TIKA GHQWYW+YEY+DY+     +L FDSYMIP  DL  GQ RLL
Sbjct:    2 AHPTQLGLQDASSPIMEELLLFHDHALMTVFLISTLVLYIIMTAV-----STKLTNKHLLDAQEIEIVWTVMPALVLIAIALPSLRILYLMDEIN-DPHLTIKATGHQWYWSYEYTDYD-----TLNFDSYMIPTQDLLPGQFRLL 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PISOC (Cytochrome c oxidase subunit 2 OS=Pisaster ochraceus GN=COII PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 3
Query:  393 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            + G ++E +WT+ P++IL+FIA+PS  LLY +DEV  +P +TIKAIGHQWYW+YEY+DY     + L FDSYMIP +DL LG  RLL V
Sbjct:   56 LEGQSLETIWTVIPAVILIFIALPSLQLLYLIDEVN-NPFLTIKAIGHQWYWSYEYADY-----RDLEFDSYMIPTNDLTLGNPRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_FELCA (Cytochrome c oxidase subunit 2 OS=Felis catus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 60/153 (39.22%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_EULMA (Cytochrome c oxidase subunit 2 OS=Eulemur macaco GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDAA+P+M+                           L             ++H +T     +E +WTI P++IL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     ++L FDSYM P  DL+ G+LRLL V
Sbjct:    2 AYPVQLGFQDAASPIMEELLYFHDHTLMIMFLISSLVLYIISLML----------TTELIHTSTMDAQEVETVWTILPAVILILIALPSLRILYMMDEIST-PSLTLKTMGHQWYWSYEYTDY-----ENLCFDSYMAPPSDLKPGELRLLEV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_OENHY1.449e-2239.22Cytochrome c oxidase subunit 2 OS=Oenomys hypoxant... [more]
COX2_HAPGR1.449e-2239.19Cytochrome c oxidase subunit 2 OS=Hapalemur griseu... [more]
COX2_GERGE1.449e-2238.56Cytochrome c oxidase subunit 2 OS=Gerbillus gerbil... [more]
COX2_DASNO1.449e-2239.74Cytochrome c oxidase subunit 2 OS=Dasypus novemcin... [more]
COX2_CAVAP1.449e-2239.22Cytochrome c oxidase subunit 2 OS=Cavia aperea GN=... [more]
COX2_PSECP1.893e-2239.22Cytochrome c oxidase subunit 2 OS=Pseudalopex culp... [more]
COX2_POLOR1.893e-2240.41Cytochrome c oxidase subunit 2 OS=Polypterus ornat... [more]
COX2_PISOC1.893e-2257.30Cytochrome c oxidase subunit 2 OS=Pisaster ochrace... [more]
COX2_FELCA1.893e-2239.22Cytochrome c oxidase subunit 2 OS=Felis catus GN=M... [more]
COX2_EULMA1.893e-2239.22Cytochrome c oxidase subunit 2 OS=Eulemur macaco G... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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