DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BISBI (Cytochrome c oxidase subunit 2 OS=Bison bison GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+KA+GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPFLTVKAMGHQWYWSYEYTDY-----EDLSFDSYMIPTSELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SHEEP (Cytochrome c oxidase subunit 2 OS=Ovis aries GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILIMIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTSELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RAT (Cytochrome c oxidase subunit 2 OS=Rattus norvegicus GN=Mtco2 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MOUSE (Cytochrome c oxidase subunit 2 OS=Mus musculus GN=Mtco2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILIMIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MAXBA (Cytochrome c oxidase subunit 2 OS=Maxomys bartelsii GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_LEMBA (Cytochrome c oxidase subunit 2 OS=Lemniscomys barbarus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P+ IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAAILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_GEOCP (Cytochrome c oxidase subunit 2 OS=Georychus capensis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+K +GHQWYWTYEY+DY     + L FDSYM+P  DL  G+LRLL V
Sbjct:    2 AYPHQLGFQDATSPIMEELLSFHDHTLMIVFLISSLVLYLISLML----------TTKLTHTSTMDAQEVETVWTILPAIILIMIALPSLRILYMMDEIN-NPLLTVKTMGHQWYWTYEYTDY-----EELNFDSYMVPTTDLNPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_GAZSP (Cytochrome c oxidase subunit 2 OS=Gazella spekei GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYVISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTSELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CHICK (Cytochrome c oxidase subunit 2 OS=Gallus gallus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 57/144 (39.58%), Postives = 78/144 (54.17%), Query Frame = 3
Query:  228 QLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            QLGFQDA++P+M+                           L         +    V    +E++WTI P+I+L+ +A+PS  +LY MDE+  +P +T+KAIGHQWYWTYEY+D+     + L FDSYM P  DL LG  RLL V
Sbjct:    6 QLGFQDASSPIMEELVEFHDHALMVALAICSLVLYLLTLMLME------KLSSNTVDAQEVELIWTILPAIVLVLLALPSLQILYMMDEID-EPDLTLKAIGHQWYWTYEYTDF-----KDLSFDSYMTPTTDLPLGHFRLLEV 137          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CERUN (Cytochrome c oxidase subunit 2 OS=Cervus unicolor GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYVISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTSELKPGELRLLEV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_BISBI1.893e-2239.87Cytochrome c oxidase subunit 2 OS=Bison bison GN=M... [more]
COX2_SHEEP2.472e-2239.22Cytochrome c oxidase subunit 2 OS=Ovis aries GN=MT... [more]
COX2_RAT2.472e-2238.56Cytochrome c oxidase subunit 2 OS=Rattus norvegicu... [more]
COX2_MOUSE2.472e-2238.56Cytochrome c oxidase subunit 2 OS=Mus musculus GN=... [more]
COX2_MAXBA2.472e-2238.56Cytochrome c oxidase subunit 2 OS=Maxomys bartelsi... [more]
COX2_LEMBA2.472e-2239.22Cytochrome c oxidase subunit 2 OS=Lemniscomys barb... [more]
COX2_GEOCP2.472e-2239.87Cytochrome c oxidase subunit 2 OS=Georychus capens... [more]
COX2_GAZSP2.472e-2239.22Cytochrome c oxidase subunit 2 OS=Gazella spekei G... [more]
COX2_CHICK2.472e-2239.58Cytochrome c oxidase subunit 2 OS=Gallus gallus GN... [more]
COX2_CERUN2.472e-2239.22Cytochrome c oxidase subunit 2 OS=Cervus unicolor ... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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