DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ACOWI (Cytochrome c oxidase subunit 2 OS=Acomys wilsoni GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 57/153 (37.25%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTI-----EILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                               +   + +  ++ H +T+     E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYM+P +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLV----------LYIISSMLATKMTHTSTMDAQSMETIWTILPAVILVLIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMVPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SYNCA (Cytochrome c oxidase subunit 2 OS=Syncerus caffer GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYM+P  +L+ G+LRLL V
Sbjct:    2 AYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMVPTSELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SPEVE (Cytochrome c oxidase subunit 2 OS=Speothos venaticus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                               +   + +  ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELLHFHDHTLMIVFLISSLV----------LYIISSMLTTKLTHTSTMDAQEVETVWTILPAIILVLIALPSLRILYMMDEIN-NPSLTVKTLGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HIPAM (Cytochrome c oxidase subunit 2 OS=Hippopotamus amphibius GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 60/153 (39.22%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                           L            ++ H  T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYM+P  DL+ G LRLL V
Sbjct:    2 AYPLQLGFQDAVSPIMEELLYFHDHTLMIVFLISSLVLYIITLML----------TTKLTHTNTMNAQEVETVWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMVPTSDLKPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DESAU (Cytochrome c oxidase subunit 2 OS=Desmodillus auricularis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 59/148 (39.86%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                        V  L         I    +    +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP ++L+ G+LRLL V
Sbjct:    2 AYPMQLGLQDATSPIME-----ELMNFHDHTLMIVFLISSLVLYLISLMLTTKLIHTNTMDAQEVETIWTILPAIILVLIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DACMI (Cytochrome c oxidase subunit 2 OS=Dacnomys millardi GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYM+P +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMVPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CHEME (Cytochrome c oxidase subunit 2 OS=Cheirogaleus medius GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 59/151 (39.07%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  222 PWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            P QLGFQDAA+P+M+                           L             + H +T     +E +WTI P++IL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     ++L FDSYM P  DL+ G+LRLL V
Sbjct:    4 PVQLGFQDAASPIMEELTYFHDHTLMIVFLISSLVLYIISLML----------TTELTHTSTMDAQEVETVWTILPAVILILIALPSLRILYMMDEITT-PSLTLKTMGHQWYWSYEYTDY-----ENLCFDSYMTPSSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CAPHI (Cytochrome c oxidase subunit 2 OS=Capra hircus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 60/153 (39.22%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETVWTILPAIILIMIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTSELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_APOSY (Cytochrome c oxidase subunit 2 OS=Apodemus sylvaticus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_APOSM (Cytochrome c oxidase subunit 2 OS=Apodemus semotus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISTLVLYIISLML----------TTKLTHTSTMDAQEVETVWTILPAVILIMIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_ACOWI2.472e-2237.25Cytochrome c oxidase subunit 2 OS=Acomys wilsoni G... [more]
COX2_SYNCA3.229e-2238.56Cytochrome c oxidase subunit 2 OS=Syncerus caffer ... [more]
COX2_SPEVE3.229e-2237.91Cytochrome c oxidase subunit 2 OS=Speothos venatic... [more]
COX2_HIPAM3.229e-2239.22Cytochrome c oxidase subunit 2 OS=Hippopotamus amp... [more]
COX2_DESAU3.229e-2239.86Cytochrome c oxidase subunit 2 OS=Desmodillus auri... [more]
COX2_DACMI3.229e-2237.91Cytochrome c oxidase subunit 2 OS=Dacnomys millard... [more]
COX2_CHEME3.229e-2239.07Cytochrome c oxidase subunit 2 OS=Cheirogaleus med... [more]
COX2_CAPHI3.229e-2239.22Cytochrome c oxidase subunit 2 OS=Capra hircus GN=... [more]
COX2_APOSY3.229e-2238.56Cytochrome c oxidase subunit 2 OS=Apodemus sylvati... [more]
COX2_APOSM3.229e-2238.56Cytochrome c oxidase subunit 2 OS=Apodemus semotus... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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