DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MERSH (Cytochrome c oxidase subunit 2 OS=Meriones shawi GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.602e-21
Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA++P+M+                           L            +++H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYM P ++L+ G+LRLL V
Sbjct:    2 AYPLQLGLQDASSPIMEELTNFHDHTLMIVFLISSLVLYLISLML----------TTKLIHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMTPTNELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MAMPR (Cytochrome c oxidase subunit 2 OS=Mammuthus primigenius GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.602e-21
Identity = 58/148 (39.19%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                        +  L         +   +++   +E++WTI P+IIL+ IA+PS   LY MDE+  +P +TIK +GHQW+W+YEY+DY     + L FDSYMI  D L+ G+LRLL V
Sbjct:    2 AYPLQLGFQDATSPVMEELLHFHDHTLMIIFLISSLVLYIIMLML-----TTKLVHTNMMNVQEMEMIWTILPAIILILIALPSLHTLYMMDEIN-NPLLTIKTMGHQWFWSYEYTDY-----EDLAFDSYMITTDSLKFGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ACOIG (Cytochrome c oxidase subunit 2 OS=Acomys ignitus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.602e-21
Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                               +   + +  ++ H  T     +E +WTI P+ IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYM P  DL+ G+LRLL V
Sbjct:    2 AYPLQLGLQDATSPIMEELTSFHDHTLMIVFLISSLV----------LYIISSMLTTKMTHTNTMDAQGVETIWTILPAAILVLIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLYFDSYMTPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_YPOMA (Cytochrome c oxidase subunit 2 OS=Yponomeuta malinellus GN=COII PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 47/90 (52.22%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++ G  IE++WTI P+I L+FIA+PS  LLY +DE+  +P IT+K+IGHQWYW+YEYSD+N     ++ FDSYMIP  +++  + RLL V
Sbjct:   55 LLEGQMIELIWTILPAITLIFIALPSLRLLYLLDELN-NPLITLKSIGHQWYWSYEYSDFN-----NIQFDSYMIPSKEMKFNEFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TACSP (Cytochrome c oxidase subunit 2 OS=Tachyoryctes splendens GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P Q G QDA +P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPLQYGLQDATSPIMEELLHFHDHTLMIVFLISFLVLYVIFAML----------STKLTHTSTMDAQEVETIWTILPAVILVLIALPSLRILYMMDEIY-NPALTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTTELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PERAM (Cytochrome c oxidase subunit 2 OS=Periplaneta americana GN=COII PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++ G  IE+ WTI P++IL+FIA+PS  LLY MDE+   P +T+K IGHQWYW+YEYSD+   +     FDSYMIP+D+++    RLL V
Sbjct:   55 LLEGQMIELAWTIAPAVILIFIAVPSLRLLYLMDEINT-PTVTLKTIGHQWYWSYEYSDFAKVE-----FDSYMIPQDEMDHSMFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_LYCPI (Cytochrome c oxidase subunit 2 OS=Lycaon pictus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETVWTILPAIILISIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_LEGFO (Cytochrome c oxidase subunit 2 OS=Leggadina forresti GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P+ IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP ++L+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAAILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RHAPU (Cytochrome c oxidase subunit 2 OS=Rhabdomys pumilio GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P+ IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYM P ++L+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAAILVLIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMTPTNELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_COTJA (Cytochrome c oxidase subunit 2 OS=Coturnix coturnix japonica GN=MT-CO2 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  228 QLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            QLGFQDA++P+M+                           L         +    V    +E++WTI P+I+L+ +A+PS  +LY MDE+  +P +T+KAIGHQWYW+YEY+D+     + L FDSYM P  DL  G  RLL V
Sbjct:    6 QLGFQDASSPIMEELVEFHDHALMVALAICSLVLYLLTLML------TQKLSSNTVDAQEVELIWTILPAIVLVLLALPSLQILYMMDEIE-EPDLTLKAIGHQWYWSYEYTDF-----KDLSFDSYMTPTTDLPQGHFRLLEV 137          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_MERSH1.602e-2137.91Cytochrome c oxidase subunit 2 OS=Meriones shawi G... [more]
COX2_MAMPR1.602e-2139.19Cytochrome c oxidase subunit 2 OS=Mammuthus primig... [more]
COX2_ACOIG1.602e-2137.91Cytochrome c oxidase subunit 2 OS=Acomys ignitus G... [more]
COX2_YPOMA2.093e-2152.22Cytochrome c oxidase subunit 2 OS=Yponomeuta malin... [more]
COX2_TACSP2.093e-2137.91Cytochrome c oxidase subunit 2 OS=Tachyoryctes spl... [more]
COX2_PERAM2.093e-2152.22Cytochrome c oxidase subunit 2 OS=Periplaneta amer... [more]
COX2_LYCPI2.093e-2138.56Cytochrome c oxidase subunit 2 OS=Lycaon pictus GN... [more]
COX2_LEGFO2.093e-2137.91Cytochrome c oxidase subunit 2 OS=Leggadina forres... [more]
COX2_RHAPU2.733e-2137.91Cytochrome c oxidase subunit 2 OS=Rhabdomys pumili... [more]
COX2_COTJA2.733e-2138.19Cytochrome c oxidase subunit 2 OS=Coturnix coturni... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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