DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CONPN (Cytochrome c oxidase subunit 2 OS=Conilurus penicillatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 57/153 (37.25%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P+ IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYM+P ++L+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAAILVLIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMVPTNELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_APTAU (Cytochrome c oxidase subunit 2 (Fragment) OS=Apteryx australis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 3
Query:  393 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            V    +E++WTI P+I+L+ +A+PS  +LY MDE+  +P +T+KAIGHQWYWTYEY+D+     + L FDSYMIP  +L LG  RLL V
Sbjct:   23 VDAQEVELVWTILPAIVLILLALPSLQILYMMDEID-EPDLTLKAIGHQWYWTYEYTDF-----KDLSFDSYMIPTSELPLGHFRLLEV 105          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_VULCO (Cytochrome c oxidase subunit 2 OS=Vulpes corsac GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG  DA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPFQLGLXDATSPIMEELLHFHDHTLMIVFLISSLVLYIITLML----------TTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_UROCA (Cytochrome c oxidase subunit 2 OS=Uromys caudimaculatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P+ IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP ++L+ G LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAAILVLIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNELKPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CRABU (Cytochrome c oxidase subunit 2 OS=Cratogeomys bursarius GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                           L            ++ H +T     +E +WT+ P++IL+ IA+PS  +LY MDE+  DP +T+K +GHQWYW+YEY+DY     + L+FDSYMI   DL+ G+ RLL V
Sbjct:    2 AYPMQLGLQDATSPIMEELTDFHDHTLMIVFLISTLVLYIISMML----------TTKLTHTSTMDAQEVETIWTVLPAVILVMIALPSLRILYMMDEIN-DPYLTVKTMGHQWYWSYEYTDY-----EDLMFDSYMIATSDLKPGEFRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_STRPU (Cytochrome c oxidase subunit 2 OS=Strongylocentrotus purpuratus GN=COII PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.662e-21
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 3
Query:  399 GTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            G  +E +WT+ P++IL+ IA+PS  LLY MDEV  DP +TIKA GHQWYW+YEY+D+N      L FDSYM+P  D+  G  RLL V
Sbjct:   58 GQELETIWTVIPALILILIALPSLQLLYLMDEVN-DPFLTIKAFGHQWYWSYEYTDFN-----DLEFDSYMVPTSDVSFGNPRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PHOVI (Cytochrome c oxidase subunit 2 OS=Phoca vitulina GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.662e-21
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P Q+G QDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPLQMGLQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HALGR (Cytochrome c oxidase subunit 2 OS=Halichoerus grypus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.662e-21
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P Q+G QDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPLQMGLQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CRACA (Cytochrome c oxidase subunit 2 OS=Cratogeomys castanops GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.662e-21
Identity = 60/153 (39.22%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                           L            ++ H  T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP +T+K +GHQWYW+YEY+DY     + L+FDSYMI   DL+ G LRLL V
Sbjct:    2 AYPMQLGLQDATSPIMEELTDFHDHTLMIVFLISTLVLYIISLML----------TTKLTHTNTMDAQEVETVWTILPAIILIMIALPSLRILYMMDEIN-DPYLTVKTMGHQWYWSYEYTDY-----EDLMFDSYMIATSDLKPGGLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_GALSE (Cytochrome c oxidase subunit 2 OS=Galago senegalensis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.089e-21
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 3
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            +E +WTI P++IL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY+      L FDSYM P  DLE G LRLL V
Sbjct:   61 VETVWTILPAVILILIALPSLRILYMMDEIET-PSLTLKTVGHQWYWSYEYTDYD-----KLCFDSYMTPTPDLEPGDLRLLEV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_CONPN2.733e-2137.25Cytochrome c oxidase subunit 2 OS=Conilurus penici... [more]
COX2_APTAU2.733e-2152.81Cytochrome c oxidase subunit 2 (Fragment) OS=Apter... [more]
COX2_VULCO3.570e-2137.91Cytochrome c oxidase subunit 2 OS=Vulpes corsac GN... [more]
COX2_UROCA3.570e-2137.91Cytochrome c oxidase subunit 2 OS=Uromys caudimacu... [more]
COX2_CRABU3.570e-2137.25Cytochrome c oxidase subunit 2 OS=Cratogeomys burs... [more]
COX2_STRPU4.662e-2155.17Cytochrome c oxidase subunit 2 OS=Strongylocentrot... [more]
COX2_PHOVI4.662e-2137.91Cytochrome c oxidase subunit 2 OS=Phoca vitulina G... [more]
COX2_HALGR4.662e-2137.91Cytochrome c oxidase subunit 2 OS=Halichoerus gryp... [more]
COX2_CRACA4.662e-2139.22Cytochrome c oxidase subunit 2 OS=Cratogeomys cast... [more]
COX2_GALSE6.089e-2154.76Cytochrome c oxidase subunit 2 OS=Galago senegalen... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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