DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PERFA (Cytochrome c oxidase subunit 2 OS=Perognathus flavus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 60/153 (39.22%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                           L            ++ H +T     IE +WTI P+IIL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYM+   DL+ G LRLL V
Sbjct:    2 AYPLQLGLQDATSPIMEELTSFHDHTLMIVFLISTLVLYIISLML----------TTKLTHTSTMDAQEIETIWTILPAIILIMIALPSLRVLYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLSFDSYMVNTTDLKPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PELSU (Cytochrome c oxidase subunit 2 OS=Pelomedusa subrufa GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 61/151 (40.40%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  222 PWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTI-----EILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            P Q  FQDAA+P+M+                        + +L   +   + +  ++ H  T      E++WTI P+IIL+ IA+PS  +LY MDE+   P +TIKAIGHQWYWTYEY+DY     + L F+SYMI   DL LG +RLL V
Sbjct:    4 PNQTNFQDAASPLME----------ELTHFHDHTLMIVFMISLLVLYILLSMLSTKLTHTNTANAQQAEMVWTILPAIILITIALPSLQILYMMDEIN-KPHMTIKAIGHQWYWTYEYTDY-----KELEFNSYMIQTQDLPLGHMRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CERGA (Cytochrome c oxidase subunit 2 OS=Cercocebus galeritus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/148 (41.89%), Postives = 77/148 (52.03%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                           L       N     I     +EI+WTI P+IIL+ IA+PS  +LY  DEV  +P+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   L  G LRLL V
Sbjct:    2 AHPVQLGLQDATSPVMEELITFHDHALMAMSLISLLVLYALFSTLTTKLTNTN-----ITDAQEMEIIWTILPAIILVLIALPSLRILYLTDEVN-NPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLNPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TATEM (Cytochrome c oxidase subunit 2 OS=Taterillus emini GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20
Identity = 57/153 (37.25%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA++P+M+                           L            +++H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+D+     + L FDSYMIP ++L+ G+LR L V
Sbjct:    2 AYPLQLGLQDASSPIMEELMNFHDHTLMIVFLISSLVLYLISLML----------TTKLIHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDF-----EDLSFDSYMIPTNELKPGELRQLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_AILME (Cytochrome c oxidase subunit 2 OS=Ailuropoda melanoleuca GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20
Identity = 56/153 (36.60%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+Q G QDA +P+M+                               +     +  ++ H  T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYM P  +L+ G+LRLL V
Sbjct:    2 AHPFQTGLQDATSPIMEELLHFHDHTLMIVFLISSLV----------LYIISIMLTTKLTHTNTMDAQEVETVWTILPAIILIMIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMTPTQELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TINMA (Cytochrome c oxidase subunit 2 (Fragment) OS=Tinamus major GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  393 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            V    +E++WTI P+I+L+ +A+PS  +LY MDE+  +P +T+KAIGHQWYW+YEY+D+     + L FDSYMIP  DL  G  RLL V
Sbjct:   23 VDAQEVELIWTILPAIVLILLALPSLQILYMMDEID-EPDLTLKAIGHQWYWSYEYTDF-----KDLSFDSYMIPTPDLPTGYFRLLEV 105          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SYMST (Cytochrome c oxidase subunit 2 OS=Sympetrum striolatum GN=COII PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 58/144 (40.28%), Postives = 80/144 (55.56%), Query Frame = 3
Query:  228 QLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            QL FQDAA+PMM+                        V  +    +    + + ++ G  IE  WTI P  +L+ IA+PS  LLY +DEV  +P+IT+K IGHQWYW+YEYSD+     + + FDSYMIP +++E   LRLL V
Sbjct:    6 QLNFQDAASPMME-----QLHYFHDHTMMVLVIITIMVAYIMGTMFFNKDVNRYLLDGQKIETEWTIVPVFVLVIIAMPSLRLLYLLDEVN-EPSITLKTIGHQWYWSYEYSDF-----KHIEFDSYMIPYNEMEESGLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HUMAN (Cytochrome c oxidase subunit 2 OS=Homo sapiens GN=MT-CO2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 3
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            +E +WTI P+IIL+ IA+PS  +LY  DEV  DP++TIK+IGHQWYWTYEY+DY       LIF+SYM+P   LE G LRLL V
Sbjct:   61 METVWTILPAIILVLIALPSLRILYMTDEVN-DPSLTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLEPGDLRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DRONO (Cytochrome c oxidase subunit 2 (Fragment) OS=Dromaius novae-hollandiae GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  393 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            V    +E++WTI P+I+L+ +A+PS  +LY MDE+  +P +T+KAIGHQWYWTYEY+D+     + L FDSYM+P  +L  G  RLL V
Sbjct:   23 VDAQEVELIWTILPAIVLILLALPSLQILYMMDEID-EPDLTLKAIGHQWYWTYEYTDF-----KDLSFDSYMVPTSELPSGHFRLLEV 105          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CHOPI (Cytochrome c oxidase subunit 2 OS=Choristoneura pinus GN=COII PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 47/90 (52.22%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++ G  IE++WTI P+I L+FIA+PS  LLY +DE+  +P IT+K+IGHQWYW+YEYSD+     Q++ FDSYMIP ++++    RLL V
Sbjct:   55 LLEGQMIELIWTILPAITLIFIALPSLRLLYLLDELN-NPLITLKSIGHQWYWSYEYSDF-----QNIQFDSYMIPINEMKNNNFRLLDV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_PERFA7.953e-2139.22Cytochrome c oxidase subunit 2 OS=Perognathus flav... [more]
COX2_PELSU7.953e-2140.40Cytochrome c oxidase subunit 2 OS=Pelomedusa subru... [more]
COX2_CERGA7.953e-2141.89Cytochrome c oxidase subunit 2 OS=Cercocebus galer... [more]
COX2_TATEM1.039e-2037.25Cytochrome c oxidase subunit 2 OS=Taterillus emini... [more]
COX2_AILME1.039e-2036.60Cytochrome c oxidase subunit 2 OS=Ailuropoda melan... [more]
COX2_TINMA1.357e-2051.69Cytochrome c oxidase subunit 2 (Fragment) OS=Tinam... [more]
COX2_SYMST1.357e-2040.28Cytochrome c oxidase subunit 2 OS=Sympetrum striol... [more]
COX2_HUMAN1.357e-2059.52Cytochrome c oxidase subunit 2 OS=Homo sapiens GN=... [more]
COX2_DRONO1.357e-2050.56Cytochrome c oxidase subunit 2 (Fragment) OS=Droma... [more]
COX2_CHOPI1.357e-2052.22Cytochrome c oxidase subunit 2 OS=Choristoneura pi... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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