DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PANPA (Cytochrome c oxidase subunit 2 OS=Pan paniscus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.314e-20
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 3
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            +E +WTI P+IIL+ IA+PS  +LY  DEV  DP+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   LE G LRLL V
Sbjct:   61 METVWTILPAIILVLIALPSLRILYMTDEVN-DPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLEPGDLRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_GORGO (Cytochrome c oxidase subunit 2 OS=Gorilla gorilla gorilla GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.314e-20
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 3
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            +E +WTI P+IIL+ IA+PS  +LY  DE+  DP+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   LE G LRLL V
Sbjct:   61 METIWTILPAIILVLIALPSLRILYMTDEIN-DPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLEPGDLRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RHEAM (Cytochrome c oxidase subunit 2 (Fragment) OS=Rhea americana GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.022e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  393 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            V    +E++WTI P+I+L+ +A+PS  +LY MDE+  +P +T+KAIGHQWYW+YEY+D+     + L FDSYMIP  +L  G  RLL V
Sbjct:   23 VDAQEVELIWTILPAIVLILLALPSLQILYMMDEID-EPDLTLKAIGHQWYWSYEYTDF-----KDLAFDSYMIPTTELPSGHFRLLEV 105          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PONAB (Cytochrome c oxidase subunit 2 OS=Pongo abelii GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.022e-20
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 3
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            +E +WTI P+IIL+ IA+PS  +LY  DE+  DP+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   LE G LRLL V
Sbjct:   61 METIWTILPAIILILIALPSLRILYLTDEIN-DPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLEPGDLRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MANLE (Cytochrome c oxidase subunit 2 OS=Mandrillus leucophaeus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.022e-20
Identity = 61/148 (41.22%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                           L       N     I     +E +WTI P+IIL+ IA PS  +LY  DEV  +P+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   L  G LRLL V
Sbjct:    2 AHPAQLGLQDATSPVMEELITFHDHALMAMSLISLLVLYALFSTLTTKMTNTN-----ITDAQEMETIWTILPAIILVLIAFPSLRILYMTDEVN-NPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLNPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MACFA (Cytochrome c oxidase subunit 2 OS=Macaca fascicularis GN=MT-CO2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.022e-20
Identity = 60/148 (40.54%), Postives = 77/148 (52.03%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QL  QDA +P+M+                           L       N     I     +E +WTI P++IL+ IA+PS  +LY  DEV  DP++TIK+IGHQWYWTYEY+DY       LIF+SYM+P   L+ G LRLL V
Sbjct:    2 AHPVQLSLQDATSPIMEELITFHDHAFMAMSLISFLVLYALALTLTTKLTNTN-----ITDAQEMETIWTILPAVILILIALPSLRVLYLTDEVN-DPSLTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLKPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_GORBE (Cytochrome c oxidase subunit 2 OS=Gorilla gorilla beringei GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.022e-20
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 3
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            +E +WTI P+IIL+ IA+PS  +LY  DE+  DP+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   LE G LRLL V
Sbjct:   61 METVWTILPAIILVLIALPSLRILYMTDEIN-DPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLEPGDLRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_NOTPE (Cytochrome c oxidase subunit 2 (Fragment) OS=Nothoprocta perdicaria GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.947e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  393 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            V    +E++WTI P+I+L+ +A+PS  +LY MDE+  +P +T+KAIGHQWYW+YEY+D+     + L FDSYMIP  +L  G  RLL V
Sbjct:   23 VDAQEVELIWTILPAIVLILLALPSLQILYMMDEID-EPDLTLKAIGHQWYWSYEYTDF-----KDLSFDSYMIPTTELPSGHFRLLEV 105          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_GALVR (Cytochrome c oxidase subunit 2 OS=Galeopterus variegatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.947e-20
Identity = 59/153 (38.56%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA++P+M+                           L            +++H +T     +E +WTI P++IL  IA+PS  +LY  DE+  +P +TIKA+GHQWYW+YEY+DY       L FDSYM P  DL+ G+LRLL V
Sbjct:    2 AHPLQLGLQDASSPIMEELLYFHDHALMIVFLISSLVLYTISLML----------TTKLMHTSTMNAQMVETMWTILPAVILTSIALPSLRILYMTDEIN-NPLLTIKAMGHQWYWSYEYTDYT-----DLNFDSYMTPTLDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CTEFE (Cytochrome c oxidase subunit 2 OS=Ctenocephalides felis GN=COII PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.947e-20
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++    +EI+WTI P+ +L+FIA+PS  LLY +D+    P I++KAIGHQWYW+YEY+D+N     ++ FDSYMIP ++L L   RLL V
Sbjct:   55 LLESQNVEIIWTILPAFMLIFIALPSLRLLYLLDDSN-SPLISLKAIGHQWYWSYEYTDFN-----NISFDSYMIPSNELNLNSFRLLDV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_PANPA2.314e-2059.52Cytochrome c oxidase subunit 2 OS=Pan paniscus GN=... [more]
COX2_GORGO2.314e-2058.33Cytochrome c oxidase subunit 2 OS=Gorilla gorilla ... [more]
COX2_RHEAM3.022e-2050.56Cytochrome c oxidase subunit 2 (Fragment) OS=Rhea ... [more]
COX2_PONAB3.022e-2058.33Cytochrome c oxidase subunit 2 OS=Pongo abelii GN=... [more]
COX2_MANLE3.022e-2041.22Cytochrome c oxidase subunit 2 OS=Mandrillus leuco... [more]
COX2_MACFA3.022e-2040.54Cytochrome c oxidase subunit 2 OS=Macaca fascicula... [more]
COX2_GORBE3.022e-2058.33Cytochrome c oxidase subunit 2 OS=Gorilla gorilla ... [more]
COX2_NOTPE3.947e-2050.56Cytochrome c oxidase subunit 2 (Fragment) OS=Notho... [more]
COX2_GALVR3.947e-2038.56Cytochrome c oxidase subunit 2 OS=Galeopterus vari... [more]
COX2_CTEFE3.947e-2050.00Cytochrome c oxidase subunit 2 OS=Ctenocephalides ... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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