DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_THEGE (Cytochrome c oxidase subunit 2 OS=Theropithecus gelada GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 59/148 (39.86%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                           L       N     I     +E +WTI P++IL+ IA+PS  +LY  DE+  +P+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   L  G LRLL V
Sbjct:    2 AHPVQLGLQDATSPVMEELVTFHDHALMAMFLISFLILYALSATLTTKLTNTN-----ITDAQEMETIWTILPAVILVLIALPSLRILYMTDEIN-NPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLNPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PAPHA (Cytochrome c oxidase subunit 2 OS=Papio hamadryas GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 59/148 (39.86%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                           L       N     I     +E +WTI P++IL+ IA+PS  +LY  DE+  +P+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   L  G LRLL V
Sbjct:    2 AHPVQLGLQDATSPVMEELITFHDQALMAMFLISFLILYALSSTLTTKLTNTN-----ITDAQEMETIWTILPAVILILIALPSLRILYMTDEIN-NPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLNPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PAPAN (Cytochrome c oxidase subunit 2 OS=Papio anubis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 59/148 (39.86%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG QDA +P+M+                           L       N     I     +E +WTI P++IL+ IA+PS  +LY  DE+  +P+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   L  G LRLL V
Sbjct:    2 AHPVQLGLQDATSPVMEELITFHDQALMAMFLISFLILYALSSTLTTKLTNTN-----ITDAQEMETIWTILPAVILILIALPSLRILYMTDEIN-NPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLNPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MACMU (Cytochrome c oxidase subunit 2 OS=Macaca mulatta GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 60/148 (40.54%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QL  QDA +P+M+                        +  L             I     +E +WTI P+IIL+ IA+PS  +LY  DEV  DP+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   L  G LRLL V
Sbjct:    2 AHPVQLSLQDATSPVMEELITFHDHAFMAMSLISFLVLYALLSTL-----TTKLTNTSITDAQEMETIWTILPAIILILIALPSLRILYLTDEVN-DPSFTIKSIGHQWYWTYEYTDYG-----GLIFNSYMLPPLFLNPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HYLSY (Cytochrome c oxidase subunit 2 OS=Hylobates syndactylus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            I     +E +WTI P+IIL+ IA+PS  +LY  DE+  DP+ TIKAIGHQWYW YEY+DY       LIF+SYM+P   LE G LRLL V
Sbjct:   55 ITDAQEMETVWTILPAIILVLIALPSLRILYLTDEIN-DPSFTIKAIGHQWYWAYEYTDYG-----GLIFNSYMLPPLFLEPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HYLLA (Cytochrome c oxidase subunit 2 OS=Hylobates lar GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            I     +E +WTI P+IIL+ IA+PS  +LY  DE+  DP+ TIKAIGHQWYW YEY+DY       LIF+SYM+P   LE G LRLL V
Sbjct:   55 ITDAQEMETVWTILPAIILVLIALPSLRILYLTDEIN-DPSFTIKAIGHQWYWAYEYTDYG-----GLIFNSYMLPPLFLEPGDLRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CHORO (Cytochrome c oxidase subunit 2 OS=Choristoneura rosaceana GN=COII PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 46/90 (51.11%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++ G  IE++WTI P+I L+FIA+PS  LLY +DE+  +P IT+K+IGHQWYW+YEYSD+     +++ FDSYMIP ++++    RLL V
Sbjct:   55 LLEGQMIELIWTILPAITLIFIALPSLRLLYLLDELN-NPLITLKSIGHQWYWSYEYSDF-----KNIQFDSYMIPINEMKNDNFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_NYCPR (Cytochrome c oxidase subunit 2 OS=Nyctereutes procyonoides GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+ S  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETVWTILPAIILILIALLSLRILYMMDEIN-NPFLTMKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BRALA (Cytochrome c oxidase subunit 2 OS=Branchiostoma lanceolatum GN=COII PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.793e-20
Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG  DAA+P+M+                        +  +         I + +  G  IE +WT+ P+IIL+ +A+PS  LLY  DE+  +P +TIK++GHQWYW+YEY+DY       + FDSYM+P  DL  G  RLL V
Sbjct:    2 ATPAQLGLMDAASPVMEEMIYFHDHVMLVLILITCLIFYSMLVLI-----SSKYIYRFLTDGHVIETVWTVIPAIILVVVALPSLKLLYLTDELD-NPQLTIKSVGHQWYWSYEYTDY-----YDIEFDSYMLPLGDLSKGDARLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BRAFL (Cytochrome c oxidase subunit 2 OS=Branchiostoma floridae GN=COII PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.793e-20
Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLG  DAA+P+M+                        +  +         I + +  G  IE +WT+ P+IIL+ +A+PS  LLY  DE+  +P +TIK++GHQWYW+YEY+DY       + FDSYM+P  DL  G  RLL V
Sbjct:    2 ATPAQLGLMDAASPVMEEMIYFHDHVMLVLILITCLIFYSMLVLI-----SSKYIYRFLTDGHVIETVWTVIPAIILVVVALPSLKLLYLTDELD-NPQLTIKSVGHQWYWSYEYTDY-----YDIEFDSYMLPLGDLSKGDARLLEV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_THEGE5.155e-2039.86Cytochrome c oxidase subunit 2 OS=Theropithecus ge... [more]
COX2_PAPHA5.155e-2039.86Cytochrome c oxidase subunit 2 OS=Papio hamadryas ... [more]
COX2_PAPAN5.155e-2039.86Cytochrome c oxidase subunit 2 OS=Papio anubis GN=... [more]
COX2_MACMU5.155e-2040.54Cytochrome c oxidase subunit 2 OS=Macaca mulatta G... [more]
COX2_HYLSY5.155e-2055.56Cytochrome c oxidase subunit 2 OS=Hylobates syndac... [more]
COX2_HYLLA5.155e-2055.56Cytochrome c oxidase subunit 2 OS=Hylobates lar GN... [more]
COX2_CHORO5.155e-2051.11Cytochrome c oxidase subunit 2 OS=Choristoneura ro... [more]
COX2_NYCPR6.733e-2037.91Cytochrome c oxidase subunit 2 OS=Nyctereutes proc... [more]
COX2_BRALA8.793e-2037.84Cytochrome c oxidase subunit 2 OS=Branchiostoma la... [more]
COX2_BRAFL8.793e-2037.84Cytochrome c oxidase subunit 2 OS=Branchiostoma fl... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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