DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ALBCO (Cytochrome c oxidase subunit 2 OS=Albinaria coerulea GN=COII PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.404e-17
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  372 NPIPQRIVH-GTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            N +  R +H    +E LWTI P+ +L+++A+PS  LLY +DE   +  I +KAIGHQWYW+YE    N S+     FDSYMIPE+DL+ G  RLL V
Sbjct:   48 NTLSTRTMHEAQLLETLWTILPAFLLVWLALPSLRLLYLLDEQGSE-GIILKAIGHQWYWSYEMPSMNISN-----FDSYMIPEEDLKPGDYRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_EXERO (Cytochrome c oxidase subunit 2 OS=Exeristes roborator GN=COII PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.395e-17
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            I+   TIEI+WTI P IIL+++AIPS  +LY  DE+  +P +TIK+IGHQWYW+YEYSD+ + D     F+S+MI  +   L   RLL V
Sbjct:   55 IMQNQTIEIIWTIIPMIILIYMAIPSLKILYLNDEIN-NPLMTIKSIGHQWYWSYEYSDFKNID-----FNSFMI--NSKNLNHFRLLDV 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_RHOSH (Cytochrome c oxidase subunit 2 OS=Rhodobacter sphaeroides GN=ctaC PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 3
Query:  219 EPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMI 614
            +P   GFQ +A+P+                          + A+W FH K+N +P R  H + +EI WTI P +IL+ I   S  +L++  E + +  +T+K  G+QWYW YEY D      + + F+SYMI
Sbjct:   37 QPGGTGFQPSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFNQQE-IPEADVTVKVTGYQWYWGYEYPD------EEISFESYMI 161          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_APILI (Cytochrome c oxidase subunit 2 OS=Apis mellifera ligustica GN=COII PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 3
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            IEI+WTI P IIL+ I  PS  +LY +DE+V +P  +IK+IGHQWYW+YEY ++N+ +     FDSYM+  ++  L Q RLL
Sbjct:   61 IEIIWTIIPIIILLIICFPSLKILYLIDEIV-NPFFSIKSIGHQWYWSYEYPEFNNIE-----FDSYMLNYNN--LNQFRLL 134          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PARDE (Cytochrome c oxidase subunit 2 OS=Paracoccus denitrificans GN=ctaC PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  357 FHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDL 629
            F+ + NP+P R  H T IE++WT+ P +IL+ I   S  +L+   E+  DP + IKAIGHQWYW+YEY +        + FD+ M+ ++ L
Sbjct:   89 FNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFRSQEMPNDPDLVIKAIGHQWYWSYEYPN------DGVAFDALMLEKEAL 173          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_APIKO (Cytochrome c oxidase subunit 2 OS=Apis koschevnikovi GN=COII PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            IEI+WTI P +IL+ I  PS  +LY +DE++ +P  +IK+IGHQWYW+YEY ++N+ +     FDSYM+   +  L Q RLL
Sbjct:   61 IEIIWTIVPIVILLIICFPSLKILYLIDEII-NPFFSIKSIGHQWYWSYEYPEFNNIE-----FDSYMLNYSN--LNQFRLL 134          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DINSE (Cytochrome c oxidase subunit 2 OS=Dinodon semicarinatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  408 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            +E  WT+ P +IL+  A+PS   LY M+EV  +P +TIKA GHQWYW YEY     SD   + FDSYMI   DL+ G  RLL V
Sbjct:   62 LEAAWTVAPIMILILTALPSVRSLYLMEEVF-NPYLTIKATGHQWYWNYEY-----SDGVKISFDSYMIQTKDLQNGSPRLLEV 139          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CAERE (Cytochrome c oxidase subunit 2 (Fragment) OS=Caenorhabditis remanei GN=cox-2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  411 EILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            E+L +IFP+IIL+   +PS +LLY    + +D  +T+K  GHQWYW+YEYSD        L FDSYM   D L LG+ RLL V
Sbjct:   63 ELLCSIFPTIILLMQMVPSLSLLYYYGLMNLDSNLTVKVTGHQWYWSYEYSDI-----PGLEFDSYMKSLDQLNLGEPRLLEV 140          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CAEEL (Cytochrome c oxidase subunit 2 OS=Caenorhabditis elegans GN=cox-2 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  411 EILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            E+L +IFP+IIL+   +PS +LLY    + +D  +T+K  GHQWYW+YEYSD        L FDSYM   D L LG+ RLL V
Sbjct:   64 ELLCSIFPTIILLMQMVPSLSLLYYYGLMNLDSNLTVKVTGHQWYWSYEYSDI-----PGLEFDSYMKSLDQLSLGEPRLLEV 141          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CAEBR (Cytochrome c oxidase subunit 2 OS=Caenorhabditis briggsae GN=cox-2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  411 EILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            E+L +IFP+IIL+   +PS +LLY    + +D  +T+K  GHQWYW+YEYSD        L FDSYM   D L LG+ RLL V
Sbjct:   64 ELLCSIFPTIILLMQMVPSLSLLYYYGLMNLDSNLTVKVTGHQWYWSYEYSDI-----PGLEFDSYMKSLDQLNLGEPRLLEV 141          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_ALBCO1.404e-1748.45Cytochrome c oxidase subunit 2 OS=Albinaria coerul... [more]
COX2_EXERO2.395e-1751.11Cytochrome c oxidase subunit 2 OS=Exeristes robora... [more]
COX2_RHOSH4.516e-1632.58Cytochrome c oxidase subunit 2 OS=Rhodobacter spha... [more]
COX2_APILI5.898e-1651.22Cytochrome c oxidase subunit 2 OS=Apis mellifera l... [more]
COX2_PARDE1.314e-1540.66Cytochrome c oxidase subunit 2 OS=Paracoccus denit... [more]
COX2_APIKO1.716e-1548.78Cytochrome c oxidase subunit 2 OS=Apis koschevniko... [more]
COX2_DINSE3.823e-1551.19Cytochrome c oxidase subunit 2 OS=Dinodon semicari... [more]
COX2_CAERE1.897e-1449.40Cytochrome c oxidase subunit 2 (Fragment) OS=Caeno... [more]
COX2_CAEEL1.897e-1449.40Cytochrome c oxidase subunit 2 OS=Caenorhabditis e... [more]
COX2_CAEBR1.897e-1449.40Cytochrome c oxidase subunit 2 OS=Caenorhabditis b... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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