DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_GADMO (Cytochrome c oxidase subunit 2 OS=Gadus morhua GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.505e-24
Identity = 63/146 (43.15%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGFQDAA+P+M+                        V  +           + I+    IEI+WT+ P++IL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     + L FDSYMIP  DL  GQ RLL
Sbjct:    2 AHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMV-----STKLTNKYILDSQEIEIIWTVLPAVILILIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----EDLGFDSYMIPTQDLAPGQFRLL 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CARAU (Cytochrome c oxidase subunit 2 OS=Carassius auratus GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.505e-24
Identity = 62/146 (42.47%), Postives = 83/146 (56.85%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGFQDAA+P+M+                        +  +           + I+    IEI+WTI P++IL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     ++L FDSYM+P  DL  GQ RLL
Sbjct:    2 AHPTQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIIAMV-----STKLTNKYILDSQEIEIVWTILPAVILVLIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----ENLGFDSYMVPTQDLAPGQFRLL 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ANOGA (Cytochrome c oxidase subunit 2 OS=Anopheles gambiae GN=COII PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.505e-24
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++HG TIEI+WT+ P+IILMFIA PS  LLY MDE+   P+IT+K+IGHQWYW+YEYSD+      +L FDSYM+P ++LE    RLL V
Sbjct:   55 LLHGQTIEIIWTVLPAIILMFIAFPSLRLLYLMDEINT-PSITLKSIGHQWYWSYEYSDF-----LNLEFDSYMVPTNELETNGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROSI (Cytochrome c oxidase subunit 2 OS=Drosophila simulans GN=mt:CoII PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.884e-24
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  N + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE + +P++T+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNNYVNRFLLHGQLIEMIWTILPAIILLFIALPSLRLLYLLDE-INEPSVTLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELTTDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CULQU (Cytochrome c oxidase subunit 2 OS=Culex quinquefasciatus GN=COII PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.884e-24
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  390 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            ++HG TIEI+WTI P+IILMFIA PS  LLY +DE +  P IT+KAIGHQWYW+YEYS++      +L FDSYMIP ++L+L   RLL V
Sbjct:   55 LLHGQTIEIIWTILPAIILMFIAFPSLRLLYLLDE-INSPLITLKAIGHQWYWSYEYSNF-----MNLEFDSYMIPTNELDLNGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_SALSA (Cytochrome c oxidase subunit 2 OS=Salmo salar GN=mt-co2 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 7.685e-24
Identity = 62/146 (42.47%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGFQDAA+P+M+                        V  +           + I+    IEI+WT+ P++IL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     + L FDSYM+P  DL  GQ RLL
Sbjct:    2 AHPSQLGFQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVAMV-----STKLTNKYILDSQEIEIVWTVLPAVILILIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----EDLGFDSYMVPTQDLTPGQFRLL 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROME (Cytochrome c oxidase subunit 2 OS=Drosophila melanogaster GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.685e-24
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  N + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE + +P++T+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNNYVNRFLLHGQLIEMIWTILPAIILLFIALPSLRLLYLLDE-INEPSVTLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELMTDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BALPH (Cytochrome c oxidase subunit 2 OS=Balaenoptera physalus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.004e-23
Identity = 63/153 (41.18%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDAA+P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDEV  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AYPFQLGFQDAASPIMEELLHFHDHTLMIVFLISSLVLYIITLML----------TTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEVN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ONCMY (Cytochrome c oxidase subunit 2 OS=Oncorhynchus mykiss GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 62/146 (42.47%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGFQDAA+P+M+                        V  +             I+    IEI+WT+ P++IL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     + L FDSYM+P  DL  GQ RLL
Sbjct:    2 AHPSQLGFQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVAMV-----STKLTNMYILDSQEIEIVWTVLPAVILILIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----EDLGFDSYMVPTQDLVPGQFRLL 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_HORSE (Cytochrome c oxidase subunit 2 OS=Equus caballus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                               +   + +  ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLV----------LYIISSMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTSDLKPGELRLLEV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_GADMO4.505e-2443.15Cytochrome c oxidase subunit 2 OS=Gadus morhua GN=... [more]
COX2_CARAU4.505e-2442.47Cytochrome c oxidase subunit 2 OS=Carassius auratu... [more]
COX2_ANOGA4.505e-2458.89Cytochrome c oxidase subunit 2 OS=Anopheles gambia... [more]
COX2_DROSI5.884e-2441.26Cytochrome c oxidase subunit 2 OS=Drosophila simul... [more]
COX2_CULQU5.884e-2460.00Cytochrome c oxidase subunit 2 OS=Culex quinquefas... [more]
COX2_SALSA7.685e-2442.47Cytochrome c oxidase subunit 2 OS=Salmo salar GN=m... [more]
COX2_DROME7.685e-2441.26Cytochrome c oxidase subunit 2 OS=Drosophila melan... [more]
COX2_BALPH1.004e-2341.18Cytochrome c oxidase subunit 2 OS=Balaenoptera phy... [more]
COX2_ONCMY1.311e-2342.47Cytochrome c oxidase subunit 2 OS=Oncorhynchus myk... [more]
COX2_HORSE1.311e-2339.22Cytochrome c oxidase subunit 2 OS=Equus caballus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
back to top