DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROMI (Cytochrome c oxidase subunit 2 OS=Drosophila miranda GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROLO (Cytochrome c oxidase subunit 2 OS=Drosophila lowei GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROBF (Cytochrome c oxidase subunit 2 OS=Drosophila bifasciata GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 60/143 (41.96%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + I + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N  +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITILVGYLMFMLFFNSYINRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNDIE-----FDSYMIPTNELSNDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROAM (Cytochrome c oxidase subunit 2 OS=Drosophila ambigua GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELSNDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BALMU (Cytochrome c oxidase subunit 2 OS=Balaenoptera musculus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 62/153 (40.52%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDEV  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIITLML----------TTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEVN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_BALBO (Cytochrome c oxidase subunit 2 OS=Balaenoptera borealis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 62/153 (40.52%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDEV  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIITLML----------TTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEVN-NPSLTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TETNG (Cytochrome c oxidase subunit 2 OS=Tetraodon nigroviridis GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 60/146 (41.10%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLL 653
            A P QLGFQDAA+P+M+                                       + I+    IE++WTI P++IL+ IA+PS  +LY MDE+  DP +T+K +GHQWYW+YEY+DY+      L FDSYMIP  DL  GQ RLL
Sbjct:    2 AHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIAATA-----STKLTDKYILDSQEIEVIWTIMPAVILILIALPSLRILYLMDEIN-DPHLTVKTMGHQWYWSYEYTDYD-----DLSFDSYMIPTQDLTPGQFRLL 136          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMTO (Cytochrome c oxidase subunit 2 OS=Tamias townsendii GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     IE +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEIETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLNPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PROTA (Cytochrome c oxidase subunit 2 OS=Propithecus tattersalli GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDAA+P+M+                           L            +++H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     + L FDSYM+P  DL+ G+LRLL V
Sbjct:    2 AYPVQLGFQDAASPIMEELLYFHDHTLMIVFLISSLVLYIISLML----------TTKLMHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEITT-PSLTLKTMGHQWYWSYEYTDY-----EDLSFDSYMVPSSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_PHYHA (Cytochrome c oxidase subunit 2 OS=Phyllostomus hastatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 62/153 (40.52%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                               +   + +  R+ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++TIK +GHQWYW+YEY+DY+      L FDSYMIP  DL+ G LRLL V
Sbjct:    2 ALPFQLGFQDATSPIMEELLHFHDHTLMIVFMISSLV----------LYLISSMLTTRLTHTSTMDAQEVETIWTILPAIILITIALPSLRILYMMDEIN-NPSMTIKTMGHQWYWSYEYTDYS-----ELCFDSYMIPTSDLKSGGLRLLEV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_DROMI2.920e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila miran... [more]
COX2_DROLO2.920e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila lowei... [more]
COX2_DROBF2.920e-2341.96Cytochrome c oxidase subunit 2 OS=Drosophila bifas... [more]
COX2_DROAM2.920e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila ambig... [more]
COX2_BALMU2.920e-2340.52Cytochrome c oxidase subunit 2 OS=Balaenoptera mus... [more]
COX2_BALBO2.920e-2340.52Cytochrome c oxidase subunit 2 OS=Balaenoptera bor... [more]
COX2_TETNG3.814e-2341.10Cytochrome c oxidase subunit 2 OS=Tetraodon nigrov... [more]
COX2_TAMTO3.814e-2340.52Cytochrome c oxidase subunit 2 OS=Tamias townsendi... [more]
COX2_PROTA3.814e-2339.87Cytochrome c oxidase subunit 2 OS=Propithecus tatt... [more]
COX2_PHYHA3.814e-2340.52Cytochrome c oxidase subunit 2 OS=Phyllostomus has... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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