DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_MICPE (Cytochrome c oxidase subunit 2 OS=Microtus pennsylvanicus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 60/153 (39.22%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA++P+M+                           L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDASSPIMEELMNFHDHTLMIVFLISSLVLYIITLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROTO (Cytochrome c oxidase subunit 2 OS=Drosophila tolteca GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELANDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DRONR (Cytochrome c oxidase subunit 2 OS=Drosophila narragansett GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELANDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROAZ (Cytochrome c oxidase subunit 2 OS=Drosophila azteca GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELANDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROAT (Cytochrome c oxidase subunit 2 OS=Drosophila athabasca GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELANDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROAL (Cytochrome c oxidase subunit 2 OS=Drosophila algonquin GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELANDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_DROAI (Cytochrome c oxidase subunit 2 OS=Drosophila affinis GN=mt:CoII PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 LGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            LG QD+A+P+M+                        V  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL V
Sbjct:    7 LGLQDSASPLME-----QLIFFHDHALLILVMITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELANDGFRLLDV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_CERSI (Cytochrome c oxidase subunit 2 OS=Ceratotherium simum GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLL V
Sbjct:    2 AYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTSDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ANIIM (Cytochrome c oxidase subunit 2 OS=Anisomys imitator GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 60/153 (39.22%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P+QLG QDA +P+M+                        +  L            ++ H +T     +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLL V
Sbjct:    2 AYPFQLGLQDATSPIMEELTSFHDHTLMIVFLISSLVLYIILLML----------TTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEV 138          
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_XENLA (Cytochrome c oxidase subunit 2 OS=Xenopus laevis GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 64/148 (43.24%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDAA+P+M+                           +       N     ++    IE++WTI P+I L+ IA+PS  +LY MDEV  DP +TIKAIGHQWYW+YEY++Y     + L FDSYMIP +DL  GQ RLL V
Sbjct:    2 AHPSQLGFQDAASPIMEELLHFHDHTLMAVFLISTLVLYIITIMMTTKLTNTN-----LMDAQEIEMVWTIMPAISLIMIALPSLRILYLMDEVN-DPHLTIKAIGHQWYWSYEYTNY-----EDLSFDSYMIPTNDLTPGQFRLLEV 138          
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_MICPE3.814e-2339.22Cytochrome c oxidase subunit 2 OS=Microtus pennsyl... [more]
COX2_DROTO3.814e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila tolte... [more]
COX2_DRONR3.814e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila narra... [more]
COX2_DROAZ3.814e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila aztec... [more]
COX2_DROAT3.814e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila athab... [more]
COX2_DROAL3.814e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila algon... [more]
COX2_DROAI3.814e-2341.26Cytochrome c oxidase subunit 2 OS=Drosophila affin... [more]
COX2_CERSI3.814e-2339.87Cytochrome c oxidase subunit 2 OS=Ceratotherium si... [more]
COX2_ANIIM3.814e-2339.22Cytochrome c oxidase subunit 2 OS=Anisomys imitato... [more]
COX2_XENLA4.981e-2343.24Cytochrome c oxidase subunit 2 OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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