DN135279

Overview
NameDN135279
Unique NameDN135279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMSO (Cytochrome c oxidase subunit 2 OS=Tamias sonomae GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMRF (Cytochrome c oxidase subunit 2 OS=Tamias rufus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLNPGELRLLEV 138
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMPL (Cytochrome c oxidase subunit 2 OS=Tamias palmeri GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMMR (Cytochrome c oxidase subunit 2 OS=Tamias merriami GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLNPGELRLLEV 138
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMDO (Cytochrome c oxidase subunit 2 OS=Tamias dorsalis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMCI (Cytochrome c oxidase subunit 2 OS=Tamias cinereicollis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMCA (Cytochrome c oxidase subunit 2 OS=Tamias canipes GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMBU (Cytochrome c oxidase subunit 2 OS=Tamias bulleri GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMAM (Cytochrome c oxidase subunit 2 OS=Tamias amoenus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P++LGFQDA +P+M+                           L            ++ H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLL V
Sbjct:    2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
[Close]
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ORNAN (Cytochrome c oxidase subunit 2 OS=Ornithorhynchus anatinus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 63/153 (41.18%), Postives = 82/153 (53.59%), Query Frame = 3 
Query:  216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659
            A P QLGFQDA +P+M+                               +     +  ++ H  T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +TIK +GHQWYW+YEYSDY     + L FDSYMIP  DL  GQLRLL V
Sbjct:    2 AYPLQLGFQDATSPIMEELLHFHDHTLMIVFLISSLV----------LYIISTMLTTKLTHTNTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPNLTIKTLGHQWYWSYEYSDY-----EDLSFDSYMIPTQDLLPGQLRLLEV 138
The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
COX2_TAMSO4.981e-2339.87Cytochrome c oxidase subunit 2 OS=Tamias sonomae G... [more]
COX2_TAMRF4.981e-2339.87Cytochrome c oxidase subunit 2 OS=Tamias rufus GN=... [more]
COX2_TAMPL4.981e-2339.87Cytochrome c oxidase subunit 2 OS=Tamias palmeri G... [more]
COX2_TAMMR4.981e-2339.87Cytochrome c oxidase subunit 2 OS=Tamias merriami ... [more]
COX2_TAMDO4.981e-2339.87Cytochrome c oxidase subunit 2 OS=Tamias dorsalis ... [more]
COX2_TAMCI4.981e-2339.87Cytochrome c oxidase subunit 2 OS=Tamias cinereico... [more]
COX2_TAMCA4.981e-2339.87Cytochrome c oxidase subunit 2 OS=Tamias canipes G... [more]
COX2_TAMBU4.981e-2339.87Cytochrome c oxidase subunit 2 OS=Tamias bulleri G... [more]
COX2_TAMAM4.981e-2339.87Cytochrome c oxidase subunit 2 OS=Tamias amoenus G... [more]
COX2_ORNAN4.981e-2341.18Cytochrome c oxidase subunit 2 OS=Ornithorhynchus ... [more]

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Properties
Property NameValue
Genbank descriptionwca08h12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bp
CCGGGGGCAAGNNAAGCTGACTGAGTGTTCATTAATGCCCAAAACTCCCT
NGCCTTTCTTGGTTGGACCAAGGCGATTTCTGTCTTCCTGATTTGGGATA
GTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATG
AAGCAAAGCAAATGATTGTTCGTTTACTAGAATGGTTATTCCTTACAATT
GCTCCTTGTGATGCAGCGGAACCGTGGCAATTAGGATTTCAAGACGCAGC
AACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTCTTCT
TTCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGTGCTTTA
TGGCATTTCCATTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGG
AACTACTATCGAGATTCTTTGGACCATCTTTCCTAGTATCATCTTGATGT
TCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTA
GTAGATCCAGCCATCACTATCAAAGCTATTGGGCATCAATGGTATTGGAC
TTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCATTTTTG
ACAGTTATATGATTCCAGAGGATGATCTAGAATTGGGTCAATTACGTTTA
TTANNNGTGG
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