DN135279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMSO (Cytochrome c oxidase subunit 2 OS=Tamias sonomae GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMRF (Cytochrome c oxidase subunit 2 OS=Tamias rufus GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLNPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMPL (Cytochrome c oxidase subunit 2 OS=Tamias palmeri GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMMR (Cytochrome c oxidase subunit 2 OS=Tamias merriami GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLNPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMDO (Cytochrome c oxidase subunit 2 OS=Tamias dorsalis GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMCI (Cytochrome c oxidase subunit 2 OS=Tamias cinereicollis GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMCA (Cytochrome c oxidase subunit 2 OS=Tamias canipes GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMBU (Cytochrome c oxidase subunit 2 OS=Tamias bulleri GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_TAMAM (Cytochrome c oxidase subunit 2 OS=Tamias amoenus GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 61/153 (39.87%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P++LGFQDA +P+M+ L ++ H +T +E +WTI P+IIL+ IA+PS +LY MDE+ DP++T+K +GHQWYW+YEY+DY + L FDSYMIP DL G+LRLL V Sbjct: 2 AYPFELGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLML----------TTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEV 138
BLAST of DN135279 vs. ExPASy Swiss-Prot
Match: COX2_ORNAN (Cytochrome c oxidase subunit 2 OS=Ornithorhynchus anatinus GN=MT-CO2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23 Identity = 63/153 (41.18%), Postives = 82/153 (53.59%), Query Frame = 3 Query: 216 AEPWQLGFQDAATPMMQGXXXXXXXXXXXXXXXXXXXXXXXVRALWHFHYKKNPIPQRIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLXV 659 A P QLGFQDA +P+M+ + + ++ H T +E +WTI P+IIL+ IA+PS +LY MDE+ +P +TIK +GHQWYW+YEYSDY + L FDSYMIP DL GQLRLL V Sbjct: 2 AYPLQLGFQDATSPIMEELLHFHDHTLMIVFLISSLV----------LYIISTMLTTKLTHTNTMDAQEVETIWTILPAIILILIALPSLRILYMMDEIN-NPNLTIKTLGHQWYWSYEYSDY-----EDLSFDSYMIPTQDLLPGQLRLLEV 138 The following BLAST results are available for this feature:
BLAST of DN135279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 302
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Sequences
The
following sequences are available for this feature:
EST sequence >DN135279 ID=DN135279; Name=DN135279; organism=Citrus sinensis; type=EST; length=660bpback to top |