DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_BORAP (Threonyl-tRNA synthetase OS=Borrelia afzelii (strain PKo) GN=thrS PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.883e-59
Identity = 109/213 (51.17%), Postives = 154/213 (72.30%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            SYR+LP R A+ G ++R E  GAL G+ R R F QDDAHI C  SQ+ DE++ VL F  Y +  FGF + +  LST+P+K++G+ + WE +   L EAL+ F  P++I++G GAFYGPKID+ + D+L+R++Q +T+Q DF LP+RFN+ Y+AED  K +RP MIHRA+LGS+ER F IL+EHY G +P WLSP QA++ PV+   + YA++V
Sbjct:  291 SYRDLPFRWAELGTVYRYEKIGALHGIMRARGFTQDDAHIICTHSQVLDEIKEVLRFAIYMWSKFGFNSLKAYLSTKPDKFVGNDSDWEMSLKVLEEALSGFEVPYEIDKGGGAFYGPKIDLKIVDSLEREWQMSTIQFDFNLPERFNMTYTAED-GKEKRPFMIHRALLGSIERFFGILIEHYGGAFPLWLSPIQAVIIPVNNAVEDYAIKV 502          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SULSY (Threonyl-tRNA synthetase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=thrS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.378e-59
Identity = 112/220 (50.91%), Postives = 149/220 (67.73%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHI 676
            K RSY+E P+RLA+ G ++R E SGAL GL RVR F QDDAHI CRE Q++DE+R VL       + +GF  +E+ LST+PEKY+GD   WE AE +L +A+   G  ++I++G GAFYGPKID+ + DA+ R +QC+T+Q DF LP+RF++ Y  ED  K  RP MIHRAI GS+ER   +LLEHY G  P WLSP Q  + P++     YA  V+  +
Sbjct:  349 KQRSYKEFPIRLAELGTVYRYERSGALHGLMRVRGFTQDDAHIICREDQVEDEIREVLNLALNTLKSYGFDEFEVYLSTKPEKYVGDDKMWEVAENSLRKAIESTGLDYKIDDGGGAFYGPKIDVKIKDAIGRLWQCSTIQFDFNLPERFDMYYIGEDNQK-HRPYMIHRAIFGSIERFIGVLLEHYAGFLPVWLSPVQVKIIPIADKHLEYAETVKQKL 567          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHOSK (Threonyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=thrS PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.330e-59
Identity = 110/215 (51.16%), Postives = 146/215 (67.91%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            ++SYR+LPLRLA+FG  HR E+SG++ GL RVR F QDDAHIFC E QI+ E    +E +   Y+  GF ++E+KLSTRPE  +G    W+K E AL  A+ + G  ++I+ G+GAFYGPK+D  ++DA+ RK+QC T Q+D  LP R    Y  ED AK  RP M+HRAILGS ER   IL+E+Y GK PFWL+PRQ +V  +   + PY  +V
Sbjct:  355 LKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIFCTEDQIESECAAFIELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVETALENAIRKVGAAYEIDPGEGAFYGPKLDFKLTDAIGRKWQCGTFQVDPNLPTRLGAEYIGEDGAK-HRPYMLHRAILGSFERFIGILIENYAGKLPFWLAPRQVVVASIVSDADPYVAEV 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHOS4 (Threonyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=thrS PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.330e-59
Identity = 110/215 (51.16%), Postives = 146/215 (67.91%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            ++SYR+LPLRLA+FG  HR E+SG++ GL RVR F QDDAHIFC E QI+ E    +E +   Y+  GF ++E+KLSTRPE  +G    W+K E AL  A+ + G  ++I+ G+GAFYGPK+D  ++DA+ RK+QC T Q+D  LP R    Y  ED AK  RP M+HRAILGS ER   IL+E+Y GK PFWL+PRQ +V  +   + PY  +V
Sbjct:  355 LKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIFCTEDQIESECAAFIELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVETALENAIRKVGAAYEIDPGEGAFYGPKLDFKLTDAIGRKWQCGTFQVDPNLPTRLGAEYIGEDGAK-HRPYMLHRAILGSFERFIGILIENYAGKLPFWLAPRQVVVASIVSDADPYVAEV 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHOS1 (Threonyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=thrS PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.330e-59
Identity = 110/215 (51.16%), Postives = 146/215 (67.91%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            ++SYR+LPLRLA+FG  HR E+SG++ GL RVR F QDDAHIFC E QI+ E    +E +   Y+  GF ++E+KLSTRPE  +G    W+K E AL  A+ + G  ++I+ G+GAFYGPK+D  ++DA+ RK+QC T Q+D  LP R    Y  ED AK  RP M+HRAILGS ER   IL+E+Y GK PFWL+PRQ +V  +   + PY  +V
Sbjct:  355 LKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIFCTEDQIESECAAFIELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVETALENAIRKVGAAYEIDPGEGAFYGPKLDFKLTDAIGRKWQCGTFQVDPNLPTRLGAEYIGEDGAK-HRPYMLHRAILGSFERFIGILIENYAGKLPFWLAPRQVVVASIVSDADPYVAEV 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_AZOSB (Threonyl-tRNA synthetase OS=Azoarcus sp. (strain BH72) GN=thrS PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.330e-59
Identity = 113/227 (49.78%), Postives = 150/227 (66.08%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYR+LPLR+A+FG  HRNE SG+L G+ RVR F QDDAHIFC + Q+++E    +  +   Y  FGF   ++KLSTRPEK +G    W+ AEAAL  AL   G  +++  G+GAFYGPKI+ S+ D L R +QC TLQLDF LP R    Y AED  K + PVM+HRAI+GS+ER   IL+EHY G  P WL+P  A+V  +S     YA +V + +  AG+ V+
Sbjct:  344 LKSYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRNFVQDDAHIFCTDEQVQEEAAAFIALLQKVYADFGFRDIQIKLSTRPEKRVGADEQWDAAEAALAAALKAQGLEYELQPGEGAFYGPKIEFSLKDCLNRVWQCGTLQLDFNLPVRLGAEYVAEDNTK-KFPVMLHRAIVGSLERFIGILIEHYAGAMPLWLAPVHAVVMNISEGQADYATEVVNRLREAGFRVE 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_ALHEH (Threonyl-tRNA synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.330e-59
Identity = 116/227 (51.10%), Postives = 150/227 (66.08%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYR+LPLRLA+FG  HRNE SG L GL RVR F QDDAHIFC E QI+ EV   ++ +  AY  FGF    + LSTRP++ +G+ A W+KAE AL EALN  G  WQ+  G+GAFYGPKI+ ++ D L R +Q  T+Q+DF +P R    Y AED +K + PVM+HRAILGS+ER   IL+EHY G  P WL+P QA+V  ++     YA ++       G  VD
Sbjct:  344 LKSYRDLPLRLAEFGSCHRNEPSGTLHGLMRVRNFVQDDAHIFCTEDQIQQEVADFIDLVFKAYNDFGFDDVIIALSTRPDERVGEDALWDKAEHALEEALNRAGLEWQLQPGEGAFYGPKIEFTLKDCLGRTWQLGTIQVDFSMPGRLGATYVAEDGSK-KVPVMLHRAILGSLERFIGILIEHYAGALPPWLAPVQAVVLNITDRQGEYARRIEKRFRERGLRVD 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHOS5 (Threonyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=thrS PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.088e-58
Identity = 110/215 (51.16%), Postives = 146/215 (67.91%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            ++SYR+LPLRLA+FG  HR E+SG++ GL RVR F QDDAHIFC E QI+ E    +E +   Y+  GF ++E+KLSTRPE  +G    W+K E AL  A+ + G  ++I+ G+GAFYGPK+D  ++DA+ RK+QC T Q+D  LP R    Y  ED AK  RP M+HRAILGS ER   IL+E+Y GK PFWL+PRQ +V  +   + PY  +V
Sbjct:  355 LKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIFCTEDQIEGECAAFIELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVETALENAIKKVGAAYEIDPGEGAFYGPKLDFKLTDAIGRKWQCGTFQVDPNLPTRLGAEYIGEDGAK-HRPYMLHRAILGSFERFIGILIENYAGKLPFWLAPRQVVVASIVSDADPYVAEV 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PARL1 (Threonyl-tRNA synthetase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=thrS PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.088e-58
Identity = 113/223 (50.67%), Postives = 151/223 (67.71%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            V+SYR+LPLR+A+FG  HRNE  GAL GL RVR+  QDDAHIFC E QIK+E    +  ++  Y   GFT  +L+L+TRP+   G   TW+KAE AL EAL   GK +    G+GAFYGPK++  + DA+ R +Q  TLQLDF LP+R +  Y  ED  K  RPVM+HRAILGS+ER   IL+E+Y+G++P WL+P QA+V  ++  + PYA ++   +  AG
Sbjct:  359 VKSYRDLPLRMAEFGCCHRNEPHGALHGLMRVRQMTQDDAHIFCTEDQIKEETEAFVALLESVYEDMGFTGTKLRLATRPDVRAGTDETWDKAEKALEEALKALGKEFDFAPGEGAFYGPKLEFHLRDAIGRSWQLGTLQLDFVLPERLDASYIGEDGNK-HRPVMLHRAILGSLERFIGILIENYEGRFPMWLAPVQAVVTTITSDADPYAEEMLQKLRDAG 580          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HAHCH (Threonyl-tRNA synthetase OS=Hahella chejuensis (strain KCTC 2396) GN=thrS PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.088e-58
Identity = 113/226 (50.00%), Postives = 151/226 (66.81%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            +RSYR+LPLRLA+FG  HRNEASGAL GL RVR F QDDAHIFC E QI++EV   ++F+   Y  FGF+  + KLSTRPEK +G    W+K+E AL +AL+  G PW+   G+GAFYGPK++ S+ D L R +QC T+Q+DF +P R    Y   DE   + PVM+HRAILGS ER   IL+EHY+G +P WL+P Q  +  ++     Y  ++ + +   G+ V
Sbjct:  344 LRSYRDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIFCTEEQIQEEVGKFIDFLHEVYADFGFSEIIYKLSTRPEKRVGSDEIWDKSEKALADALDAKGLPWEELPGEGAFYGPKVEFSLKDCLGRLWQCGTVQVDFSMPGRLGAQY-VSDEQVRKTPVMLHRAILGSFERFIGILIEHYEGAFPSWLAPTQVAILNITDKQADYCKKIGEILNDKGFRV 568          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_BORAP4.883e-5951.17Threonyl-tRNA synthetase OS=Borrelia afzelii (stra... [more]
SYT_SULSY6.378e-5950.91Threonyl-tRNA synthetase OS=Sulfurihydrogenibium s... [more]
SYT_RHOSK8.330e-5951.16Threonyl-tRNA synthetase OS=Rhodobacter sphaeroide... [more]
SYT_RHOS48.330e-5951.16Threonyl-tRNA synthetase OS=Rhodobacter sphaeroide... [more]
SYT_RHOS18.330e-5951.16Threonyl-tRNA synthetase OS=Rhodobacter sphaeroide... [more]
SYT_AZOSB8.330e-5949.78Threonyl-tRNA synthetase OS=Azoarcus sp. (strain B... [more]
SYT_ALHEH8.330e-5951.10Threonyl-tRNA synthetase OS=Alkalilimnicola ehrlic... [more]
SYT_RHOS51.088e-5851.16Threonyl-tRNA synthetase OS=Rhodobacter sphaeroide... [more]
SYT_PARL11.088e-5850.67Threonyl-tRNA synthetase OS=Parvibaculum lavamenti... [more]
SYT_HAHCH1.088e-5850.00Threonyl-tRNA synthetase OS=Hahella chejuensis (st... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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