DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHORT (Threonyl-tRNA synthetase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=thrS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.134e-58
Identity = 112/215 (52.09%), Postives = 144/215 (66.98%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            ++SYR+LPLR+A+FG  HRNEASGAL GL RVR F QDDAHIFC E QI  E +   + +   YR  GFT  ++K S RPE   G   TW+KAEAAL EA +  G  W +N G+GAFYGPK++  + DA+ R +QC TLQ+DF LP+R    Y  ED  K  RPVM+HRAILG+ ER   IL+E+  G++PFWL+P Q +V  ++  +  YA  V
Sbjct:  345 IKSYRDLPLRMAEFGACHRNEASGALHGLMRVRAFVQDDAHIFCTEDQIVSETQAFCDLLKSVYRDLGFTEIKVKFSDRPEVRAGSDETWDKAEAALREATDAAGLEWTLNPGEGAFYGPKLEFVLRDAIGRDWQCGTLQVDFVLPERLGADYVGEDGDK-HRPVMLHRAILGTFERFMGILIENCAGRFPFWLAPVQVVVATITSDADDYARTV 558          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DESVM (Threonyl-tRNA synthetase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=thrS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.134e-58
Identity = 111/226 (49.12%), Postives = 152/226 (67.26%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            +RSYR+LP R+ + GV+HR+E SG L GL RVR+F QDDAHI CR  Q++ E+ GV+  +     +FGF Y + +STRPEK +G    W++A  AL  A+   G    INEGDGAFYGPKIDI V+DA+ R++Q +T+Q+DF LPDRF+L Y  +D  +  RPVM+HRAILGS+ER   +L EH+ G +P W+ P QA +  V+     +A+  RD +  AG  V+
Sbjct:  344 LRSYRDLPRRMFELGVVHRHEKSGVLHGLLRVRQFTQDDAHILCRPDQLEAEIIGVIALVRDLMGLFGFDYRIVISTRPEKSIGSDEDWDRATNALIGAVATAGLSHTINEGDGAFYGPKIDIKVTDAIGREWQLSTIQVDFTLPDRFDLVYIGQD-GERHRPVMVHRAILGSLERFIGVLTEHFAGAFPTWIVPVQARLLTVTDAQNDFAMGARDQLVAAGLRVE 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CLOK5 (Threonyl-tRNA synthetase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=thrS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.134e-58
Identity = 110/214 (51.40%), Postives = 142/214 (66.36%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            +RSYR+LP R A+ GV+HR+E SGAL GL RVR F QDDAHIF  +  I DE+  V++ ID  Y+IFGF Y ++LSTRPE  +G    WE A   L  AL   G  ++INEGDGAFYGPKID  + D + R +QC T+QLDFQ+P++F+L Y   D  K  RPVMIHR + GS+ER   IL+EHY G +P W++P Q  V  ++     Y  +V
Sbjct:  344 IRSYRDLPKRYAEMGVVHRHEKSGALHGLMRVRCFTQDDAHIFVTKDDIADEIIKVIDLIDNFYKIFGFEYFVELSTRPEDSMGSDEDWEAATEGLKNALKMVGLDYKINEGDGAFYGPKIDFHLKDCIGRTWQCGTVQLDFQMPEKFDLNYIGADGEK-HRPVMIHRVVFGSIERFIGILIEHYAGAFPAWIAPVQVQVMNITDAQADYVAEV 556          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CLOK1 (Threonyl-tRNA synthetase OS=Clostridium kluyveri (strain NBRC 12016) GN=thrS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.134e-58
Identity = 110/214 (51.40%), Postives = 142/214 (66.36%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            +RSYR+LP R A+ GV+HR+E SGAL GL RVR F QDDAHIF  +  I DE+  V++ ID  Y+IFGF Y ++LSTRPE  +G    WE A   L  AL   G  ++INEGDGAFYGPKID  + D + R +QC T+QLDFQ+P++F+L Y   D  K  RPVMIHR + GS+ER   IL+EHY G +P W++P Q  V  ++     Y  +V
Sbjct:  344 IRSYRDLPKRYAEMGVVHRHEKSGALHGLMRVRCFTQDDAHIFVTKDDIADEIIKVIDLIDNFYKIFGFEYFVELSTRPEDSMGSDEDWEAATEGLKNALKMVGLDYKINEGDGAFYGPKIDFHLKDCIGRTWQCGTVQLDFQMPEKFDLNYIGADGEK-HRPVMIHRVVFGSIERFIGILIEHYAGAFPAWIAPVQVQVMNITDAQADYVAEV 556          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_ACTPJ (Threonyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=thrS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.134e-58
Identity = 112/223 (50.22%), Postives = 149/223 (66.82%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++SYR+LP+R+A+FG  HRNE SG+L GL RVR F QDDAHIFC E QI+ EV   +  +   Y  FGF+  ++KLSTRPE  +GD A W++AE  L +AL   G  ++I EG+GAFYGPKI+ ++ D L R++QC T+QLDF LP R +  Y AED  +   PVMIHRAILGS+ER   I+ E Y G +P WL+P QA+V  ++     Y  +V   +  AG
Sbjct:  345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEDQIESEVTSCIRMVYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRAEDGLAKALTANGLSYEIQEGEGAFYGPKIEFALRDCLDREWQCGTIQLDFALPGRLDASYVAEDNGR-RTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQKVTKALSDAG 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_ACTP7 (Threonyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=thrS PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.134e-58
Identity = 112/223 (50.22%), Postives = 149/223 (66.82%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++SYR+LP+R+A+FG  HRNE SG+L GL RVR F QDDAHIFC E QI+ EV   +  +   Y  FGF+  ++KLSTRPE  +GD A W++AE  L +AL   G  ++I EG+GAFYGPKI+ ++ D L R++QC T+QLDF LP R +  Y AED  +   PVMIHRAILGS+ER   I+ E Y G +P WL+P QA+V  ++     Y  +V   +  AG
Sbjct:  345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEDQIESEVTSCIRMVYDIYSTFGFSNIQVKLSTRPENRIGDDAMWDRAEDGLAKALTANGLSYEIQEGEGAFYGPKIEFALRDCLDREWQCGTIQLDFALPGRLDASYVAEDNGR-RTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQKVTKALSDAG 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MARAV (Threonyl-tRNA synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=thrS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.399e-58
Identity = 112/227 (49.34%), Postives = 151/227 (66.52%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SY++LPLRLA+FG  HRNEASGAL GL RVR F QDDAHIFC E  I++EV   +  +   Y  FGF+  L KLSTRPEK +G    W+K+EAAL +ALN  G  W++  G+GAFYGPKI+ S+ D L R +QC T+Q+DF +P R    Y A D ++ + PVM+HRA+LGS ER   IL+E Y+G +P WL+P Q  V  ++   + Y   +   +  +GY V+
Sbjct:  344 LKSYKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIFCEEDAIQEEVSAFIAMLHEIYADFGFSEILYKLSTRPEKRVGSDEVWDKSEAALEQALNREGVDWELLPGEGAFYGPKIEFSLKDCLGRVWQCGTIQVDFSMPGRLGAQYVA-DNSERKTPVMLHRAVLGSFERFIGILIEEYEGAFPTWLAPTQVAVLNITDKQRDYCQNLAKKLDSSGYRVN 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HAES2 (Threonyl-tRNA synthetase OS=Haemophilus somnus (strain 2336) GN=thrS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.399e-58
Identity = 114/226 (50.44%), Postives = 149/226 (65.93%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            ++SYR+LP+R+A+FG  HRNE SG+L GL RVR F QDDAHIFC E QI+ EV   ++ +   Y  FGFT   +KLSTRPEK +G+   W++AE  L  AL   G  ++I EG+GAFYGPKI+ ++ D L R++QC T+QLDF LP R +  Y AED A+   PVMIHRAILGS+ER   I+ E Y G +P WL+P QA+V  ++     Y  +V      AG  V
Sbjct:  345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEDQIESEVTSCIKMVYDIYSTFGFTDIFVKLSTRPEKRIGEDVMWDRAEQGLANALKHNGLEYEIQEGEGAFYGPKIEFALRDCLDREWQCGTIQLDFALPGRLDATYVAEDNAR-RTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPIQAVVMNITDSQADYVQKVVKQFSEAGLRV 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_HAES1 (Threonyl-tRNA synthetase OS=Haemophilus somnus (strain 129Pt) GN=thrS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.399e-58
Identity = 114/226 (50.44%), Postives = 149/226 (65.93%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            ++SYR+LP+R+A+FG  HRNE SG+L GL RVR F QDDAHIFC E QI+ EV   ++ +   Y  FGFT   +KLSTRPEK +G+   W++AE  L  AL   G  ++I EG+GAFYGPKI+ ++ D L R++QC T+QLDF LP R +  Y AED A+   PVMIHRAILGS+ER   I+ E Y G +P WL+P QA+V  ++     Y  +V      AG  V
Sbjct:  345 LKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEDQIESEVTSCIKMVYDIYSTFGFTDIFVKLSTRPEKRIGEDVMWDRAEQGLANALKHNGLEYEIQEGEGAFYGPKIEFALRDCLDREWQCGTIQLDFALPGRLDATYVAEDNAR-RTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPIQAVVMNITDSQADYVQKVVKQFSEAGLRV 569          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_IDILO (Threonyl-tRNA synthetase OS=Idiomarina loihiensis GN=thrS PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.051e-58
Identity = 111/215 (51.63%), Postives = 145/215 (67.44%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQV 664
            ++SYR+LPLR+A+FG  HRNE SGAL GL RVR F QDDAHIFC E Q+++EV G ++ +   Y+ FGF   ++KLSTRPEK LGD ATW+++E AL +AL      +    G+GAFYGPKI+ ++ D L R +QC T+QLDF LP R    Y  ED  +   PVMIHRAILGS+ER   IL+E Y G +P WLSP Q ++  ++     Y  +V
Sbjct:  345 LKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEQQVQEEVAGCIKMVYETYKTFGFENIDVKLSTRPEKRLGDDATWDRSETALAQALKNNDIDFSYLPGEGAFYGPKIEFTLFDCLGRAWQCGTIQLDFALPGRLGATYVGEDNER-HTPVMIHRAILGSLERFMGILIEEYAGHFPLWLSPTQVVLMNITDNQSDYVRKV 558          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_RHORT4.134e-5852.09Threonyl-tRNA synthetase OS=Rhodospirillum rubrum ... [more]
SYT_DESVM4.134e-5849.12Threonyl-tRNA synthetase OS=Desulfovibrio vulgaris... [more]
SYT_CLOK54.134e-5851.40Threonyl-tRNA synthetase OS=Clostridium kluyveri (... [more]
SYT_CLOK14.134e-5851.40Threonyl-tRNA synthetase OS=Clostridium kluyveri (... [more]
SYT_ACTPJ4.134e-5850.22Threonyl-tRNA synthetase OS=Actinobacillus pleurop... [more]
SYT_ACTP74.134e-5850.22Threonyl-tRNA synthetase OS=Actinobacillus pleurop... [more]
SYT_MARAV5.399e-5849.34Threonyl-tRNA synthetase OS=Marinobacter aquaeolei... [more]
SYT_HAES25.399e-5850.44Threonyl-tRNA synthetase OS=Haemophilus somnus (st... [more]
SYT_HAES15.399e-5850.44Threonyl-tRNA synthetase OS=Haemophilus somnus (st... [more]
SYT_IDILO7.051e-5851.63Threonyl-tRNA synthetase OS=Idiomarina loihiensis ... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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