DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13572 contig Csv1_Contig13572:1203..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DESOH (Threonyl-tRNA synthetase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=thrS PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.502e-63
Identity = 115/220 (52.27%), Postives = 155/220 (70.45%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            SYR+LPLR+A+ G++HR+E SG L+GL RVR F QDDAHIF    QI+ E+ GVL+ ++  Y  FG  + L+LSTRP K +G    W KA A L  AL+ +GK + +NEGDGAFYGPKID+ + DAL R +QC T+QLD  LP+RF+L Y  +  ++ +RPVMIHR I GS+ER   IL+EH+ GK+P WL+P QA++ P++    PYA +VR    +AG
Sbjct:  342 SYRDLPLRVAEIGLVHRHELSGVLSGLFRVRAFHQDDAHIFMTPDQIEQEIFGVLKLVETIYSTFGLGFHLELSTRPAKSIGTDEQWVKATAGLRAALDAYGKGYAVNEGDGAFYGPKIDVHIKDALGRTWQCGTIQLDMSLPERFDLSY-IDAGSEKQRPVMIHRVIYGSIERFLGILIEHFAGKFPLWLAPTQAVLLPLNDDMIPYAREVRQEFEQAG 560          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CAMLR (Threonyl-tRNA synthetase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=thrS PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.502e-63
Identity = 117/222 (52.70%), Postives = 156/222 (70.27%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            VRSYR+LPL+  ++GV+HR+E SG L GL RVR F QDDAHIFC  SQIK++V  +L F+D   + FGF YE+++STRP K +GD   W+ A  AL +AL+E G  + I+EG GAFYGPKIDI ++DALKRK+QC T+Q+DF LP RF L Y+  D  K ++PVM+HRAILGS ER   IL+EH  G+ PF+++P Q  + P+S     YA ++   +   G
Sbjct:  312 VRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILSFVDTLMKAFGFDYEMEISTRPAKAIGDDEIWDIATNALKQALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFKLEYTDADNEK-KQPVMLHRAILGSFERFIGILIEHCAGELPFFIAPTQVAIVPISQNHHEYAKEIAKKLLELG 532          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CAMHC (Threonyl-tRNA synthetase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=thrS PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.280e-63
Identity = 115/216 (53.24%), Postives = 159/216 (73.61%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVR 667
            ++RSYR+LPL+  ++GV+HR+E SG + GL RVR F QDDAHIFC  SQIK+ V  +L+F+D   + FGF+YE+++ST+PEK +GD   WE A  AL EAL+E G  + I+EG GAFYGPKIDI ++DALKRK+QC T+Q+DF LP RF+LGY  E+  + ++PVM+HRAILGS ER   IL+EH  G+ PF+++P    + P++     YA +V+
Sbjct:  317 EIRSYRDLPLKFFEYGVVHRHEKSGVMHGLFRVREFTQDDAHIFCMPSQIKENVLEILDFVDKIMKNFGFSYEMEISTKPEKAIGDDKVWEIATNALKEALDENGFKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFDLGYIDENNER-KQPVMLHRAILGSFERFIGILIEHTAGELPFFIAPTGVSIIPINDAHLNYAKEVQ 531          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_THESQ (Threonyl-tRNA synthetase OS=Thermotoga sp. (strain RQ2) GN=thrS PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.508e-63
Identity = 117/223 (52.47%), Postives = 153/223 (68.61%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            SYR+LPLR  +FG +HR E SG L GL RVR F QDDAHIFC   QI++E+ GVL+ I+  Y  FGFTY ++LST PE ++GD A WEKA  AL  AL   G  +++NEG+GAFYGPKID  + D++ R++QCAT+QLDF +P++FN+ Y   D  K  R VMIHRAI GS+ER F IL+EH+ G +P WL+P Q  V P+S      A ++   I + G+ V
Sbjct:  345 SYRDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFCTPGQIEEEILGVLDLINTIYSQFGFTYRVELSTMPEDHMGDEAIWEKATTALKNALERAGLSYKVNEGEGAFYGPKIDFHIRDSIGREWQCATIQLDFMMPEKFNVTYIGPDN-KEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTWLAPIQVAVIPISEKHNDGAEKIAKRISQEGFRV 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_THEMA (Threonyl-tRNA synthetase OS=Thermotoga maritima GN=thrS PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.508e-63
Identity = 118/223 (52.91%), Postives = 153/223 (68.61%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            SYR+LPLR  +FG +HR E SG L GL RVR F QDDAHIFC   QI++E+ GVL+ I+  Y  FGFTY ++LST PE ++GD A WEKA  AL  AL   G  +++NEG+GAFYGPKID  + D++ R++QCAT+QLDF +P++FN+ Y   D  K  R VMIHRAI GS+ER F IL+EH+ G +P WL+P Q  V P+S      A +V   I + G+ V
Sbjct:  345 SYRDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFCTPDQIEEEILGVLDLINTIYSQFGFTYRVELSTMPEDHMGDEAIWEKATTALKNALERAGLSYKVNEGEGAFYGPKIDFHIRDSIGREWQCATIQLDFMMPEKFNVTYIGPDN-KEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTWLAPIQVAVIPISEKHNDGAEKVARRISQEGFRV 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DESAA (Threonyl-tRNA synthetase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=thrS PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.508e-63
Identity = 117/223 (52.47%), Postives = 152/223 (68.16%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            K  SY +LP+R  + G++HR+E SG L+GL RVR F QDDAHIF  E  I+DE+ GVL+ ++  Y  FG  + L+LSTRPEK +G    WEKA   L  AL++ G+ ++INEGDGAFYGPKIDI + DAL R +QC T+QLD  LP+RF+L Y   D  +  RPVMIHR I GS+ER   IL+EHY GK+P WLSP QA+V  ++     YA +V+  +  AG
Sbjct:  339 KHHSYNDLPIRAGEIGLVHRHELSGVLSGLFRVRAFHQDDAHIFMTEEMIEDEILGVLQLVERMYSTFGLGFHLELSTRPEKTIGTDEQWEKATEGLRAALDKSGRDYKINEGDGAFYGPKIDIHIKDALGRTWQCGTIQLDMNLPERFDLTYVGADNQR-HRPVMIHRVIYGSIERFLGILIEHYAGKFPLWLSPCQAVVLAMNDDVAGYAKEVKARLEEAG 560          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_CAMJJ (Threonyl-tRNA synthetase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=thrS PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.508e-63
Identity = 116/218 (53.21%), Postives = 156/218 (71.56%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHI 676
            VRSYR+LPL+  ++GV+HR+E SG L GL RVR F QDDAHIFC  SQIK++V  +L F+D   ++F F+YE+++ST+PEK +GD   WE A  AL EALNE G  + I+EG GAFYGPKIDI ++DALKRK+QC T+Q+DF LP RF L Y+  D  K ++PVM+HRAILGS ER   IL EH  G++PF+++P    + P+      YA +++  +
Sbjct:  311 VRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKAIGDDEIWEIATKALKEALNEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTVQVDFNLPSRFKLEYTDSDNEK-KQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKEL 527          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_THEP1 (Threonyl-tRNA synthetase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=thrS PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.242e-62
Identity = 117/223 (52.47%), Postives = 153/223 (68.61%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYV 697
            SYR+LPLR  +FG +HR E SG L GL RVR F QDDAHIFC   QI++E+ GVL+ I+  Y  FGFTY ++LST PE ++GD A WEKA  AL  AL   G  +++NEG+GAFYGPKID  + D++ R++QCAT+QLDF +P++FN+ Y   D  K  R VMIHRAI GS+ER F IL+EH+ G +P WL+P Q  V P+S      A ++   I + G+ V
Sbjct:  345 SYRDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFCTPDQIEEEILGVLDLINTIYGQFGFTYRVELSTMPEDHMGDEAIWEKATTALKNALERAGLSYKVNEGEGAFYGPKIDFHIRDSIGREWQCATIQLDFMMPEKFNVTYIGPDN-KEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTWLAPIQVAVIPISEKHNDGAEKIAKRISQEGFRV 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DESAH (Threonyl-tRNA synthetase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=thrS PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.242e-62
Identity = 116/224 (51.79%), Postives = 153/224 (68.30%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            SYR+LPLR  + G++HR+E SGAL+GL RVR F QDDAHIF    QI+ E+ GVLE ++  Y  FG  + L+LSTRP+K +G    W +A   L  AL+++G+P+ INEGDGAFYGPKIDI + DAL R +QC T+QLD  LP+RF+L Y   D  K  RP+MIHR I GS+ER F IL+EH+ GK+P WL+P QA+V P++     +A  V+  +   G   D
Sbjct:  342 SYRDLPLRAGEIGLVHRHELSGALSGLFRVRAFHQDDAHIFMTPEQIESEILGVLELVERIYSRFGLGFHLELSTRPKKSIGSDEQWAEATNGLKNALDKYGQPYAINEGDGAFYGPKIDIHIKDALGRTWQCGTVQLDMALPERFDLTYKGADNEK-HRPIMIHRVIYGSIERFFGILVEHFAGKFPLWLAPVQAVVLPINDDLADHAQTVKKELESNGIRCD 564          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_NATTJ (Threonyl-tRNA synthetase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=thrS PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.622e-62
Identity = 112/224 (50.00%), Postives = 153/224 (68.30%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            SYR+ PLR+A+ G +HR+E SGAL GL R R F QDDAHIF   SQ+++E+  V+  +D  Y +FGF Y ++LST+PEK +G    W++A  AL   L + G  + +NEGDGAFYGPKID  + DA+ R +QC+T+QLDF LP+RF+L Y  ED  K  RPVMIHR I G++ER FA+L+EHY+GK+P WL+PRQA++ P++     Y   +   +   G   D
Sbjct:  348 SYRDFPLRVAELGKVHRHELSGALHGLLRARSFTQDDAHIFMLPSQVEEELENVINLVDRFYSVFGFNYYVELSTKPEKAMGSDEIWDRAINALKSVLEKRGIKYIVNEGDGAFYGPKIDFQLEDAIGRSWQCSTIQLDFLLPERFDLTYIGEDGQK-HRPVMIHRVIYGAIERFFALLIEHYEGKFPLWLAPRQAVIIPIADRHMEYGKDITKQLESEGIRAD 570          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_DESOH2.502e-6352.27Threonyl-tRNA synthetase OS=Desulfococcus oleovora... [more]
SYT_CAMLR2.502e-6352.70Threonyl-tRNA synthetase OS=Campylobacter lari (st... [more]
SYT_CAMHC7.280e-6353.24Threonyl-tRNA synthetase OS=Campylobacter hominis ... [more]
SYT_THESQ9.508e-6352.47Threonyl-tRNA synthetase OS=Thermotoga sp. (strain... [more]
SYT_THEMA9.508e-6352.91Threonyl-tRNA synthetase OS=Thermotoga maritima GN... [more]
SYT_DESAA9.508e-6352.47Threonyl-tRNA synthetase OS=Desulfatibacillum alke... [more]
SYT_CAMJJ9.508e-6353.21Threonyl-tRNA synthetase OS=Campylobacter jejuni s... [more]
SYT_THEP11.242e-6252.47Threonyl-tRNA synthetase OS=Thermotoga petrophila ... [more]
SYT_DESAH1.242e-6251.79Threonyl-tRNA synthetase OS=Desulfobacterium autot... [more]
SYT_NATTJ1.622e-6250.00Threonyl-tRNA synthetase OS=Natranaerobius thermop... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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