DN135274

Overview
NameDN135274
Unique NameDN135274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_BDEBA (Threonyl-tRNA synthetase OS=Bdellovibrio bacteriovorus GN=thrS PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.595e-52
Identity = 103/217 (47.47%), Postives = 140/217 (64.52%), Query Frame = 2
Query:   29 SYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHI 676
            SYR+LP+++ADFG LHR E SGA+ GLTRVR F QDDAHIFCR  Q+++E+   +  ++  Y   G   Y++ LSTRP+  +G    W+ AE AL EAL     P+++N GDGAFYGPK+DI   DAL R +Q  TLQ+D  LP  F+L Y+ ED  K  RPVM+HRAILGS+ER   + LEH  G  P W+ P Q  +  V+     +  ++++ +
Sbjct:  355 SYRDLPIKMADFGRLHRYEKSGAMHGLTRVRTFCQDDAHIFCRMDQLQEEIAKFMNLLNRVYDKLGMGNYKIFLSTRPDNRMGSEEYWDMAEGALAEALKSLNLPFELNPGDGAFYGPKLDIMFVDALNRPWQLGTLQVDPNLPQAFDLKYTGEDN-KEHRPVMLHRAILGSLERFIGVYLEHTAGHLPPWMMPVQVAILNVTDRVNSFCEELQNSL 570          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSYCK (Threonyl-tRNA synthetase OS=Psychrobacter cryohalolentis (strain K5) GN=thrS PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.390e-52
Identity = 104/223 (46.64%), Postives = 146/223 (65.47%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++SYR+LPLR+A+FG  HRNE SG+L GL RVR F QDDAHIFC +SQI+ EV   ++     Y  FGF    +KLSTRPEK +G   +W+ AE AL +AL+  G  W    G+GAFYGPKI+ S+ D+L R +QC T+Q+D  +P+R +  +   ++ + E P+M+HRAILGS ER   IL+E+Y G  P WL+P+Q +V  ++         V + + +AG
Sbjct:  344 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTQSQIQQEVADFIKLTLAVYEDFGFDKIIMKLSTRPEKRVGSDESWDFAEKALADALDSSGLDWAYLPGEGAFYGPKIEFSLKDSLGRVWQCGTIQVDPNMPERLDAEF-VNEQNEREVPIMLHRAILGSFERFIGILIENYAGWMPVWLAPQQVVVMNITDKQADACENVVNELKKAG 565          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DECAR (Threonyl-tRNA synthetase OS=Dechloromonas aromatica (strain RCB) GN=thrS PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.390e-52
Identity = 103/224 (45.98%), Postives = 138/224 (61.61%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGY 691
            +RSYRELPLR  +FG  HRNE +GAL GL RVR F QDD HIFC E QI+ EV      +   Y  FGF    +KL+ RP+  +G    W++AE AL + L   G  W    G+GAFYGPKI+  + DA+ R +QC T+Q+DF +P R    Y   D+ + + PVM+HRAILGS+ER   IL+E++ G  P WL+P Q +V  +S     YA +V   ++ AG+
Sbjct:  344 LRSYRELPLRYGEFGSCHRNEPAGALHGLMRVRGFVQDDGHIFCTEDQIESEVTAFNALVKKVYADFGFNDVAVKLALRPDSRVGADDVWDRAEDALRQGLRASGLEWTELPGEGAFYGPKIEFHIRDAIGRSWQCGTMQVDFSMPGRLGAEYVGADDTR-KVPVMLHRAILGSLERFIGILIENFAGALPLWLAPVQVVVLNISEKQADYAAEVAQKLHSAGF 566          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHOSR (Threonyl-tRNA synthetase OS=Rhodococcus sp. (strain RHA1) GN=thrS PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.427e-52
Identity = 107/223 (47.98%), Postives = 144/223 (64.57%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            RSYRELPLRL +FG ++R E SG + GLTRVR   QDDAHI+C   Q++DE+   L+F+    + +G   + L+LST+ P+K++GD A WE+A A L E     G     + G  AFYGPKI + V DAL R +Q +T+QLDF LP+RF+L Y+A D  K +RPVMIHRA+ GS+ER F +L EHY G +P WL+P Q +  PV+     +   V   +  AG
Sbjct:  379 RSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQMRDELATTLQFVLGLLKDYGLDDFYLELSTKNPDKFVGDDAVWEEATATLAEVAESSGLNLVPDPGGAAFYGPKISVQVQDALGRTWQMSTIQLDFNLPERFDLEYTANDGTK-QRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVAETFADHLFDVVKRLKAAG 600          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_MESSB (Threonyl-tRNA synthetase OS=Mesorhizobium sp. (strain BNC1) GN=thrS PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.427e-52
Identity = 107/229 (46.72%), Postives = 143/229 (62.45%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGK------PWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++SYR+LP+RLA+FG +HR E SGAL GL RVR F QDDAHIFC E Q+ +E   + + I   Y  FGF   ++  STRPEK +G  A W+ AE  +   L +  +         IN GDGAFYGPK D  + DA+ R++QC T Q+DF LP+RF   Y  +D  K ++PVMIHRAI GS+ER   IL+E+Y G +P W +P Q +V  ++  +  YA QV   +  AG
Sbjct:  353 LKSYRDLPIRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTEDQLAEECLKINDLILSTYADFGFEEIQVFFSTRPEKRVGSDALWDHAEEIMGGVLEQIAERSGGRIKTAINPGDGAFYGPKFDYVLKDAIGRQWQCGTTQVDFNLPERFGAFYIDKDSEK-KQPVMIHRAICGSMERFLGILIENYAGHFPLWFAPLQVVVATITSDADDYARQVTQQLKAAG 580          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DELAS (Threonyl-tRNA synthetase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.427e-52
Identity = 101/222 (45.50%), Postives = 142/222 (63.96%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRA 685
            ++SYR+LPLR  +FG  HRNE +G L G+ RVR F QDD H+FC E QI+ EV      +   Y  FGF+  + K++TRPE  +G   +W+KAEAAL  +L   G  + I+ GDGAFYGPKI+ ++ DA+ R++QC T+Q+DF +P+R +  Y  ED     RPVM+HRAI+GS+ER   IL+E + G  P WL+P QA V  ++     Y  +V   + +A
Sbjct:  348 IKSYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHVFCTEDQIQPEVLAFTTLLQKVYADFGFSDIIYKVATRPEARIGSDESWDKAEAALINSLEASGCEYVISPGDGAFYGPKIEYTLKDAIGRQWQCGTIQVDFSMPERLDAEYVGED-GDRHRPVMLHRAIVGSLERFIGILIEQHAGAMPTWLAPVQAAVLNITDAQADYVREVAQKLQKA 568          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_DEHE1 (Threonyl-tRNA synthetase OS=Dehalococcoides ethenogenes (strain 195) GN=thrS PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.427e-52
Identity = 102/213 (47.89%), Postives = 141/213 (66.20%), Query Frame = 2
Query:   20 KVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYA 655
            + RSY+ELP+R+A+ G ++R E SG L GL+RVR F QDDAHIFC   Q++ EV  VL+   +    FGFT Y++ LSTRPEKY+G+L  WE A   L +AL      +Q++ G+G FYGPKIDI   DAL R +Q  T+Q+DFQLP+RF++    ED  K +   M+HR +LGS+ER  + L E Y G +P WLSP+Q ++ P++     +A
Sbjct:  288 RTRSYKELPIRMAELGTVYRYERSGVLHGLSRVRGFTQDDAHIFCLYEQLEKEVVKVLDLAKFMIDTFGFTRYKVMLSTRPEKYVGELDKWEYATDILAKALESNQIAYQVDPGEGVFYGPKIDIKFEDALGRAWQGPTIQVDFQLPERFDVSVVGED-GKDQPVAMVHRTVLGSMERFMSCLTEQYGGAFPVWLSPKQVMLIPIADRHSEFA 499          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_SINMW (Threonyl-tRNA synthetase OS=Sinorhizobium medicae (strain WSM419) GN=thrS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 107/233 (45.92%), Postives = 147/233 (63.09%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQ------INEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAGYYVD 700
            ++SYRELP+RLA+FG +HR E SGAL GL RVR F QDDAHIFC + Q+  E   + + I   Y  FGF    +KLSTRPEK +G    W++AEA +TE L       +      I  G+GAFYGPK + ++ DA+ R++QC T Q+DF LP+RF   Y  + E++  +PVMIHRAI GS+ER   ILLE++ G  P W+SP Q +V  ++  +  Y  +V + +  AG  V+
Sbjct:  352 LKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLKTIEAQSEGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFY-IDSESEKRQPVMIHRAICGSMERFLGILLENFAGHMPLWISPLQVVVATITSEADDYGREVAERLRDAGLTVE 583          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_RHOOB (Threonyl-tRNA synthetase OS=Rhodococcus opacus (strain B4) GN=thrS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 107/223 (47.98%), Postives = 144/223 (64.57%), Query Frame = 2
Query:   26 RSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            RSYRELPLRL +FG ++R E SG + GLTRVR   QDDAHI+C   Q++DE+   L+F+    + +G   + L+LST+ P+K++GD A WE+A A L E     G     + G  AFYGPKI + V DAL R +Q +T+QLDF LP+RF+L Y+A D  K +RPVMIHRA+ GS+ER F +L EHY G +P WL+P Q +  PV+     +   V   +  AG
Sbjct:  379 RSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQMRDELATTLQFVLGLLKDYGLDDFYLELSTKNPDKFVGDDAVWEEATATLAEVAESSGLNLVPDPGGAAFYGPKISVQVQDALGRTWQMSTIQLDFNLPERFDLEYTASDGTK-KRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVAETFADHLFDVVKRLKAAG 600          
BLAST of DN135274 vs. ExPASy Swiss-Prot
Match: SYT_PSYA2 (Threonyl-tRNA synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=thrS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 103/223 (46.19%), Postives = 146/223 (65.47%), Query Frame = 2
Query:   23 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSXXSQPYALQVRDHIYRAG 688
            ++SYR+LPLR+A+FG  HRNE SG+L GL RVR F QDDAHIFC +SQI+ EV   ++     Y  FGF    +KLSTRPEK +G   +W+ AE AL +AL+  G  W    G+GAFYGPKI+ S+ D+L R +QC T+Q+D  +P+R +  +   ++ + E P+M+HRAILGS ER   IL+E+Y G  P WL+P+Q +V  ++         V + + ++G
Sbjct:  344 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTQSQIQQEVADFIKLTLAVYEDFGFNNIIMKLSTRPEKRVGSDESWDFAEKALADALDNSGLDWAYLPGEGAFYGPKIEFSLKDSLGRVWQCGTIQVDPNMPERLDAEF-VNEQNEREVPIMLHRAILGSFERFIGILIENYAGWMPVWLAPQQVVVMNITDKQAEACENVVNELKKSG 565          
The following BLAST results are available for this feature:
BLAST of DN135274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_BDEBA2.595e-5247.47Threonyl-tRNA synthetase OS=Bdellovibrio bacteriov... [more]
SYT_PSYCK3.390e-5246.64Threonyl-tRNA synthetase OS=Psychrobacter cryohalo... [more]
SYT_DECAR3.390e-5245.98Threonyl-tRNA synthetase OS=Dechloromonas aromatic... [more]
SYT_RHOSR4.427e-5247.98Threonyl-tRNA synthetase OS=Rhodococcus sp. (strai... [more]
SYT_MESSB4.427e-5246.72Threonyl-tRNA synthetase OS=Mesorhizobium sp. (str... [more]
SYT_DELAS4.427e-5245.50Threonyl-tRNA synthetase OS=Delftia acidovorans (s... [more]
SYT_DEHE14.427e-5247.89Threonyl-tRNA synthetase OS=Dehalococcoides etheno... [more]
SYT_SINMW5.782e-5245.92Threonyl-tRNA synthetase OS=Sinorhizobium medicae ... [more]
SYT_RHOOB5.782e-5247.98Threonyl-tRNA synthetase OS=Rhodococcus opacus (st... [more]
SYT_PSYA25.782e-5246.19Threonyl-tRNA synthetase OS=Psychrobacter arcticus... [more]

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Properties
Property NameValue
Genbank descriptionwca08h07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08h07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135274 ID=DN135274; Name=DN135274; organism=Citrus sinensis; type=EST; length=701bp
TACGGCCGGGGTTTGNNNTAAGGTTCGTTCATACAGAGAACTACCTCTGC
GACTGGCTGATTTTGGGGTCTTGCATCGGAATGAAGCCAGTGGAGCACTC
ACTGGATTAACTCGTGTCAGGAGATTTCAGCAGGATGACGCTCATATTTT
CTGCAGGGAGTCCCAGATAAAAGACGAAGTAAGGGGTGTCCTAGAGTTCA
TTGATTATGCCTACAGAATATTCGGGTTCACATATGAGCTGAAGCTATCA
ACTAGGCCTGAAAAGTATCTTGGGGACTTGGCAACTTGGGAGAAAGCCGA
AGCTGCTCTTACAGAAGCATTGAATGAGTTTGGGAAGCCATGGCAGATAA
ATGAAGGGGATGGAGCATTTTATGGACCAAAGATTGATATCAGTGTATCT
GATGCATTGAAGAGGAAATTCCAGTGTGCTACTTTGCAGCTTGACTTTCA
GCTTCCTGATCGTTTCAACTTGGGTTACTCAGCGGAAGATGAAGCCAAGA
CAGAGAGACCTGTTATGATACACAGAGCGATATTGGGGTCTGTTGAACGT
ATGTTTGCTATACTGTTGGAACATTACAAGGGGAAGTGGCCTTTTTGGCT
CAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCNNNGNAATCCCAACCAT
ATGCTTTACAGGTGCGGGATCATATTTATCGAGCCGGTTATTATGTTGAT
G
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