DN135236

Overview
NameDN135236
Unique NameDN135236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13457 contig Csv1_Contig13457:1053..1759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135236 vs. ExPASy Swiss-Prot
Match: C71BF_ARATH (Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=CYP71B15 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 43/180 (23.89%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  113 ILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNFRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDL 652
            +L+  +  F    K    +LPPGP   P+IGNL +      ++   LA+++GP+  L++G V  V  SS   A+E+L+  D   C+R     + A  ++   +   P    W   RK+     FS ++L + +++  ++    +  + E     + +++ +A F    N++    + I+L
Sbjct:    9 VLLPLILIFLNVLKPSKYKLPPGPKKLPIIGNLHQRRTLHPRNRRNLAEMYGPVALLQYGFVPVVAISSKEAAEEVLKINDLECCSRPEAAGMRATFYNFKDIGMAPFGDEWSLMRKLSVVELFSVKKLQSFKYIIEEENNLCVKKLSEFATRQSPVNLERAIFTLVGNIVCRIGYGINL 188          
BLAST of DN135236 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 42/113 (37.17%), Postives = 58/113 (51.33%), Query Frame = 2
Query:  167 RLPPGPTPYPVIGNLLELGDK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNFRKICNSHAFSSR 493
            +LPPGP P P+ GN L++GD   H++L  LAK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR  R+I     F+++
Sbjct:   32 KLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNK 141          
The following BLAST results are available for this feature:
BLAST of DN135236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
C71BF_ARATH6.575e-1123.89Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=C... [more]
TCMO_GLYEC8.587e-1137.17Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]

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Properties
Property NameValue
Genbank descriptionwca08c09 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08c09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135236 ID=DN135236; Name=DN135236; organism=Citrus sinensis; type=EST; length=707bp
GGCCGGGGAGGGAATGCCACCTGAATTTGGTGTTTACAAGAGCTTCAAAC
AAAAGAGAGCCAGATTAAAGATGGATATGGTAAGCTGCGTACCATGGCTT
CTATTCTCGTGGATTTTGGTCGTCGCTTTAAATTATTTTTCAAGAGGATT
CAAATCTGGATCCAGAAGGCTTCCACCGGGACCGACGCCTTATCCGGTGA
TCGGAAACCTCCTGGAACTCGGCGACAAACCTCACAAGTCACTTGCTAAA
CTTGCCAAGATTCATGGCCCCATAATGAGTCTAAAATTTGGCCAGGTGAC
CACAGTTGTCTTTTCTTCTGCAGCCATGGCCAAAGAAATCCTTCAAAATC
AAGACACATCTTTCTGTAACCGAACGATCCCAGACGCAATCTACGCCCAC
GGCCATCATGAATTCGGGATGCCCTGGCTGCCTGTGGCGACACTGTGGAG
AAATTTTCGAAAAATATGCAACTCACATGCTTTCTCTAGTCGCCAACTCG
ATGCCAATCAGCACCTTCGGCGTAAGAAAATCCAAGATCTTCTAGCTTAT
GTCCAAGAAAATTGCCGTGCAGGTACAGCAATACATATTGGCCAAGCTGC
TTTTGACACTACGCTTAATTTGATATCCAACACAATTTTTTCTATTGACT
TGGCTGATCCCACATCNNNAACTGCGCGAGAGTTTAAGCAAATAAATTGG
GGTATGA
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