DN135218

Overview
NameDN135218
Unique NameDN135218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5702 contig Csv1_Contig5702:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135218 vs. ExPASy Swiss-Prot
Match: AMYB_THETU (Thermophilic beta-amylase OS=Thermoanaerobacter thermosulfurogenes PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 76/226 (33.63%), Postives = 110/226 (48.67%), Query Frame = 1
Query:   34 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASL------KASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFQRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYN 684
            +IP+P WV  + +++ ++ Y D++G  + E +S      P   G T  Q+Y+++  SF   F  Y  D++ +I +  GP GELRYP+Y  S+G W +PG G  QCY K    S       K    A+ N  WG S   D  Q +   +   FF     + + YG  F+ WY   L      I + A   F       +  K+AG+HW Y S +  HAAE  AGYYN
Sbjct:  124 NIPIPSWVWTKDTQD-NMQYKDEAGNWDNEAVS------PWYSGLT--QLYNEFYSSFASNFSSYK-DIITKIYISGGPSGELRYPSYNPSHG-WTYPGRGSLQCYSKAAITSFQNAMKSKYGTIAAVNSAWGTS-LTDFSQISPPTDGDNFFTNG--YKTTYGNDFLTWYQSVLTNELANIASVAHSCFDPVFNVPIGAKIAGVHWLYNSPTMPHAAEYCAGYYN 335          
BLAST of DN135218 vs. ExPASy Swiss-Prot
Match: AMYB_PAEPO (Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 72/226 (31.86%), Postives = 111/226 (49.12%), Query Frame = 1
Query:   34 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASS------NEDWGRSGPHDSGQYNQFPEDTGFFQRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYN 684
            +IPLP W+  + S + ++ + D+SG  N E +S      PL  G    + Y +   SF + F  Y   ++ +I +  GP GELRYP+Y  + G W +PG G+FQ Y +  + + + +           N  WG      S Q N  P D   F  +G +NS YG+ F+ WY   L +H   I AAA + F    G ++  K++G+HW   + +  H  E   GYY+
Sbjct:  127 NIPLPSWLSSKGSAD-EMQFKDESGYANSEALS------PLWSGTG--KQYDELYASFAENFAGYKS-IIPKIYLSGGPSGELRYPSYYPAAG-WSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINAAWGTKLTSLS-QINP-PTDGDGFYTNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNNPAMPHGTEQAGGYYD 339          
BLAST of DN135218 vs. ExPASy Swiss-Prot
Match: AMYB_BACFI (Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 72/226 (31.86%), Postives = 111/226 (49.12%), Query Frame = 1
Query:   34 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASS------NEDWGRSGPHDSGQYNQFPEDTGFFQRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYN 684
            +IPLP W+  + S + ++ + D+SG  N E +S      PL  G    + Y +   SF   F  Y   ++ +I +  GP GELRYP+Y  + G W +PG G+FQ Y +  + + + +           N  WG      S Q N  P D   F  +G +NS YG+ F+ WY   L +H   I AAA + F    G ++  K++G+HW   + +  H+ E   GYY+
Sbjct:  127 NIPLPSWLSSKGSAD-EMQFKDESGYANNEALS------PLWSGTG--KQYDELYASFAQNFAGYKS-IIPKIYLSGGPSGELRYPSYYPAAG-WSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINTAWGTKLTSLS-QINP-PTDGDGFYTNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNNPAMPHSTEQAGGYYD 339          
BLAST of DN135218 vs. ExPASy Swiss-Prot
Match: AMYB_BACCI (Beta-amylase OS=Bacillus circulans PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 71/226 (31.42%), Postives = 109/226 (48.23%), Query Frame = 1
Query:   34 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASS------NEDWGRSGPHDSGQYNQFPEDTGFFQRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGT-GSKLSGKVAGIHWHYRSRS--HAAELTAGYYN 684
            +IPLP W+  + S + ++ + D+SG  N E +S      P   G    + Y +   SF   F  Y  D++ +I +  GP GELRYP+Y  + G W +P  G+FQ Y +  +++ + +           N  WG +    S      P D+  F   G +N  YG+ F+ WY   L  H   I AAA + F    G ++  K++GIHW   + S  H+AE   GYY+
Sbjct:  128 NIPLPSWLWSKGSAD-EMQFKDESGYVNNESLS------PFWSGVG--KQYDELYASFAQNFSAYK-DMIPKIYLSGGPSGELRYPSYYPAAG-WSYPARGKFQVYTETAKSAFRTAMTTKYGSLDKINAAWGTN--LTSMSQISPPTDSDGFYTGGGYNITYGKDFLSWYQSVLENHLGVIGAAAHKNFDPVFGVRIGAKISGIHWQMNNPSMPHSAEHAGGYYD 340          
BLAST of DN135218 vs. ExPASy Swiss-Prot
Match: AMYB_BACCE (Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 68/225 (30.22%), Postives = 106/225 (47.11%), Query Frame = 1
Query:   34 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYIS-LGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASL------KASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFQRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGS-KLSGKVAGIHWHYRSRS--HAAELTAGY 678
            ++P+P WV  + S +  L +  ++G  N E ++ L  D I         + Y +   +F    + Y  DV+ +I +  GP GELRYP+Y  S+GT  +P  G+FQ Y ++ ++        K  +    N+ WG     +       P D   F  +G + S YG+ ++EWY G L  H   I   A   F  T    +  K+AG+HW Y + +  H AE  AGY
Sbjct:  130 NVPIPSWVWNQKSDD-SLYFKSETGTVNKETLNPLASDVIR--------KEYGELYTAFAAAMKPYK-DVIAKIYLSGGPAGELRYPSYTTSDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDGEQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGY 340          
The following BLAST results are available for this feature:
BLAST of DN135218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMYB_THETU6.384e-2433.63Thermophilic beta-amylase OS=Thermoanaerobacter th... [more]
AMYB_PAEPO5.058e-2131.86Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 ... [more]
AMYB_BACFI8.628e-2131.86Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV... [more]
AMYB_BACCI1.246e-1931.42Beta-amylase OS=Bacillus circulans PE=3 SV=1[more]
AMYB_BACCE5.787e-1730.22Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionwca08a07 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08a07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135218 ID=DN135218; Name=DN135218; organism=Citrus sinensis; type=EST; length=684bp
CCGGGGATCTACGGCTTTATGTTGAATATGTACAGTATTCCGCTACCTCC
ATGGGTGCTTGAAGAAATCAGCAAGAATCCTGACCTGGTGTACACAGACA
AGTCAGGGAGAAGGAATCCAGAGTACATCTCGTTGGGTTGTGATACAATA
CCGTTGCTCAGAGGAAGAACACCGATTCAGGTCTACTCAGATTACATGAG
GAGCTTCCGGGACAGATTCAGAGATTACTTGGGTGATGTTGTACAGGAAA
TTCAAGTGGGCTTGGGTCCTTGCGGGGAGCTGAGATACCCAGCTTATCCA
GAAAGCAATGGGACCTGGAAGTTTCCAGGGATTGGAGAATTCCAATGCTA
TGACAAGTATATGAGAGCTTCACTGAAAGCATCAGCAGAGGCATCTAGTA
ATGAGGACTGGGGAAGGAGTGGGCCTCATGATTCTGGCCAGTATAATCAA
TTTCCTGAAGATACAGGGTTTTTCCAGAGAGATGGTACCTGGAACTCTGA
GTATGGACGGTTCTTCATGGAATGGTACTCTGGAAAGCTAATACAACATG
GTGATCGAATTCTAGCAGCTGCCAAGGAAATATTCCAAGGAACTGGCTCA
AAACTCTCTGGAAAAGTAGCCGGAATTCACTGGCACTACAGATCGAGGTC
CCATGCGGCTGAATTGACAGCCGGATACTACAAT
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