DN135214

Overview
NameDN135214
Unique NameDN135214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:128..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: FADB_IDILO (Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis GN=fadB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 41/160 (25.62%), Postives = 70/160 (43.75%), Query Frame = 3
Query:   15 LSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 494
            L EF +AL+ L    ++  ++++ +   F  G D+    ++             EK R  +         +E    P + ++ G  +GGG + + ACD R     A   + EV L +    G   RLP ++G  NA+E   TG+    L+A ++G V  V
Sbjct:   36 LEEFSEALTKLQNTDDLRGVIVTSSKSTFIVGADITEFLTLFSD---------QEKTRSWVAKASRVFDQLEDLPVPTVGAVTGFALGGGCEALLACDYRVADTTATIGLPEVKLGLIPGFGGTMRLPRVIGPDNALEWITTGKNNKALDALKVGAVDAV 186          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: FADB_PSYCK (Fatty acid oxidation complex subunit alpha OS=Psychrobacter cryohalolentis (strain K5) GN=fadB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 41/155 (26.45%), Postives = 76/155 (49.03%), Query Frame = 3
Query:   21 EFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLV 485
            +F + +++L++  ++  ++++ +   F +G D      +T+   S  +    E+ +  +  + DA    E    P +A+I+GA +GGG ++   C+ R  S  A   + E  L I    G   R   ++G  NA+EL  TG     L+A +LGLV
Sbjct:   39 QFAEVVNALEKADDIKGLIVTSSKGVFIAGAD------ITEFVASFKQSE--EEIKDWVININDAFNRFEDLPFPKVAAINGAALGGGCEMTLVCEYRVMSDKAIIGLPETQLGIFPGFGGTVRSTRVIGIDNALELIATGTPKKALDALKLGLV 185          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECHA6_MYCTU (Probable enoyl-CoA hydratase echA6 OS=Mycobacterium tuberculosis GN=echA6 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 41/145 (28.28%), Postives = 69/145 (47.59%), Query Frame = 3
Query:   60 NVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 494
            +  AIVL+G G  FC+G DL   +   D+    DR             L +   A++    PV+ +I+G  IG G+ +   CD+R  + DAFF        +  D  +++RL ++VG+G A  + L+  +     A   G+ +R+
Sbjct:   43 SARAIVLTGQGTAFCAGADLSGDAFAADYP---DR-------------LIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRI 171          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECHA6_MYCBO (Probable enoyl-CoA hydratase echA6 OS=Mycobacterium bovis GN=echA6 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 41/145 (28.28%), Postives = 69/145 (47.59%), Query Frame = 3
Query:   60 NVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 494
            +  AIVL+G G  FC+G DL   +   D+    DR             L +   A++    PV+ +I+G  IG G+ +   CD+R  + DAFF        +  D  +++RL ++VG+G A  + L+  +     A   G+ +R+
Sbjct:   43 SARAIVLTGQGTAFCAGADLSGDAFAADYP---DR-------------LIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRI 171          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: PAAG_ECOLI (Probable enoyl-CoA hydratase paaG OS=Escherichia coli (strain K12) GN=paaG PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 44/162 (27.16%), Postives = 74/162 (45.68%), Query Frame = 3
Query:    9 EFLSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 494
            E  ++  + L  ++++  +  ++L+G G  FC+G DL    +V     + D G   E      RF    V  + +  KPVI +++G   G G  +    DI   ++ A F +    L +  D G    LP + G   AM LAL G +    +A E G++ +V
Sbjct:   30 EMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLND-RNVDPTGPAPDLGMSVE------RFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQV 184          
The following BLAST results are available for this feature:
BLAST of DN135214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
FADB_IDILO4.580e-1125.63Fatty acid oxidation complex subunit alpha OS=Idio... [more]
FADB_PSYCK5.982e-1126.45Fatty acid oxidation complex subunit alpha OS=Psyc... [more]
ECHA6_MYCTU5.982e-1128.28Probable enoyl-CoA hydratase echA6 OS=Mycobacteriu... [more]
ECHA6_MYCBO5.982e-1128.28Probable enoyl-CoA hydratase echA6 OS=Mycobacteriu... [more]
PAAG_ECOLI7.813e-1127.16Probable enoyl-CoA hydratase paaG OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionwca07h11 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07h11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135214 ID=DN135214; Name=DN135214; organism=Citrus sinensis; type=EST; length=521bp
GGGGACGTGAATTCCTCTCTGAATTCCCTAAGGCCTTATCTTCCCTCGAC
CAAAATCCTAACGTCAACGCCATCGTCCTCTCAGGCACCGGCGACCACTT
CTGCTCCGGAATCGATCTGAAAACACTAAGTTCGGTCACCGACCATACCA
CTTCCACCGACCGCGGCCGCTTCTCCGAGAAGTTCCGGCGAGATATCAGG
TTCTTGCAGGATGCGGTAACTGCCATCGAGCGATGTCGGAAGCCAGTCAT
CGCATCTATCCACGGGGCGTGTATCGGAGGCGGCGTCGATATTGTCACTG
CCTGTGATATTCGGTTCTGTTCAAAAGATGCTTTTTTTTCGGTCAAAGAG
GTTGACTTGGCTATCACGGCAGATCTCGGGACTTTACAGAGGCTTCCGGC
GATTGTCGGGTATGGTAACGCGATGGAATTGGCGTTGACGGGTCGTAGGT
TTTGGGGTTTGGAGGCTAAGGAGTTGGGTCTGGTTTCTCGGGTTTTCGGG
ACGAGTTATGAATTGGATCAG
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