DN135209

Overview
NameDN135209
Unique NameDN135209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135209_ssr270 microsatellite DN135209_ssr270:270..281. BLAST: Citrus ESTs to Prunus persica proteins V1
DN135209_ssr362 microsatellite DN135209_ssr362:362..373. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1307 contig Csv1_Contig1307:190..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            I RER +  NP AM          I+  HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct:  707 IRRERERQTNPSAMEVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            I RER +  NP AM          I+  HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct:  707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            I RER +  NP AM          I+  HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct:  707 IRRERDRQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA_DROME (Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    4 IERERWKMENPE-AMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRT 219
            I RE+ + EN   AM          I + HFEE+MK+ARRSVSD DIRKY++FAQTLQQSRGFG  FRF  +T
Sbjct:  704 IRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGQNFRFPGQT 776          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    7 ERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            ER+  +    E M          I   HFEE+MK+ARRSV+D DIRKY++FAQTLQQSRGFG+ F+F
Sbjct:  719 ERQDRQARGEELMEDDAVDPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKF 785          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    7 ERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            ER+       E M          I   HFEE+MK+ARRSV+D DIRKY++FAQTLQQSRGFG+ F+F
Sbjct:  717 ERQDRSARGEELMEDELADPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKF 783          
The following BLAST results are available for this feature:
BLAST of DN135209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TERA_DANRE8.391e-1561.76Transitional endoplasmic reticulum ATPase OS=Danio... [more]
TERA_BOVIN8.391e-1561.76Transitional endoplasmic reticulum ATPase OS=Bos t... [more]
TERA_XENLA1.096e-1461.76Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_DROME1.096e-1457.53Transitional endoplasmic reticulum ATPase TER94 OS... [more]
TERA1_CAEEL1.026e-1253.73Transitional endoplasmic reticulum ATPase homolog ... [more]
TERA2_CAEEL1.340e-1253.73Transitional endoplasmic reticulum ATPase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionwca07h05 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07h05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135209 ID=DN135209; Name=DN135209; organism=Citrus sinensis; type=EST; length=649bp
GGGATTGAGAGGGAGAGGTGGAAGATGGAGAACCCTGAAGCAATGGAAGA
ANNNGAGGTCGATGATGTCGATGAGATTAAGGCAGTACACTTTGAGGAAT
CAATGAAATATGCCCGCCGGAGTGTCAGTGATGCAGACATCCGGAAATAC
CAGCTCTTTGCACAGACCTTGCAACAATCTCGTGGGTTTGGGTCCGAATT
CCGGTTTGCAGATCGTACCGAGAGTGCCGCCGCTGGGGCTGCAGATCCAT
TCTCTTCTGCCGCTGCTGCTGATGATGATGATCTATACAACTGAACTAAA
ACCGACGAAAGTTGAAGACACTGCAGTAAATGGAACATCTAGTGCCATGG
GAATATTAATTATTAATTAATTATTGCCTAGGAACACTAGTGTATACTAC
TTTCGTGTTGACTCAGTTTCATGCTTTTTGTTATGTGAAATTTCATAGTA
TTAACTTAACATAATGTATCAATGGGTGTTGAAATTTTCCTATTTCAAAT
TTAGAATCTTAATACCAACCAGACTATTAATGTGTTAGGTGTTTCGCCTC
CTAGAAGTGATTATAGCATTCTCATAGTTCATGTTACTAACTTGCTCCTA
CCGTCATGATGAATGAGCCCGTGTTCTCGTGACGGTCGTCGCATGTCTG
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