DN135204

Overview
NameDN135204
Unique NameDN135204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5699 contig Csv1_Contig5699:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_DROSE (Probable cytosolic Fe-S cluster assembly factor GM20417 OS=Drosophila sechellia GN=GM20417 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 76/202 (37.62%), Postives = 109/202 (53.96%), Query Frame = 3
Query:  156 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKA---------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            ++S  L++ D+ DFI PSQ C+  V + KA  K   K ++        S S   +   V ISL+DCLACSGCITSAE V++ +QS +E L  +   +K KA         ++I+L+ Q   SLA  + I      + L  + +SLG   +  T  + D+ L+E   EF+ RY         R N +L MLSS+CPGW+CYAE
Sbjct:    3 RWSTALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDSCFEESESGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSQEELLKILQENSKNKASEDWDNVRTIVITLATQPLLSLAHRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY---------RENENLTMLSSSCPGWVCYAE 195          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARFL_DANRE (Cytosolic Fe-S cluster assembly factor narfl OS=Danio rerio GN=narfl PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 65/129 (50.39%), Postives = 86/129 (66.67%), Query Frame = 3
Query:  333 SGCITSAETVMLEKQSLDEFLSNINKGK--------AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            SGCITSAE+V++ +QS +E    +   K         V++S+SPQSRASLA H+GI   +V +KLT+FLK LGV  +FDT+ SR  +LIE+  EF+ R+ Q      E    +LPML+SACPGWICYAE
Sbjct:    9 SGCITSAESVLITQQSHEELYRVLRHNKQVSSTEQKVVVVSVSPQSRASLAAHYGIGSSEVARKLTSFLKHLGVHHVFDTAFSRSFSLIESQREFLQRFSQR-----EADKKALPMLASACPGWICYAE 132          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_DROWI (Probable cytosolic Fe-S cluster assembly factor GK14772 OS=Drosophila willistoni GN=GK14772 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 72/203 (35.47%), Postives = 111/203 (54.68%), Query Frame = 3
Query:  156 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVST---------SSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            +FS  L++ DL DFI PSQ C+  V++ K   K   K  V           S KQ+ + V+I+L+DCLACSGCITSAE V++ +QS +E L  + +             + ++ ++S Q   SLA  + +S  +  + L+ + ++LG   +  T  + DL LIE   EF+ R++  ++         L MLSS+CPGW+CYAE
Sbjct:    3 RFSGALQLTDLDDFITPSQECIKPVTIDKTKSKTGAKITVQEDGYYEESEESGKQKLQKVEITLQDCLACSGCITSAEGVLITQQSQEELLKVLRENQKLKATGDNDLVQTIVFTISMQPILSLAHRYQLSVEETARHLSGYFRNLGADYVLCTKVADDLALIECRQEFVERFRDKED---------LTMLSSSCPGWVCYAE 196          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_DROSI (Probable cytosolic Fe-S cluster assembly factor GD17698 OS=Drosophila simulans GN=GD17698 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 76/202 (37.62%), Postives = 108/202 (53.47%), Query Frame = 3
Query:  156 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKA---------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            + S  L++ D+ DFI PSQ C+  V + KA  K   K ++        S S   +   V ISL+DCLACSGCITSAE V++ +QS +E L  +   +K KA         ++I+L+ Q   SLA  + I      + L  + +SLG   +  T  + D+ L+E   EF+ RY         R N +L MLSS+CPGW+CYAE
Sbjct:    3 RLSTALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDSCFEESESGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSQEELLKVLQENSKNKASEDWDNVRTIVITLATQPILSLAHRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY---------RENENLTMLSSSCPGWVCYAE 195          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_DROER (Probable cytosolic Fe-S cluster assembly factor GG21400 OS=Drosophila erecta GN=GG21400 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 73/200 (36.50%), Postives = 107/200 (53.50%), Query Frame = 3
Query:  162 SPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL----SNINKG--------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            S  L++ D+ DFI PSQ C+  V + KA  K   K  +        S S K++   V+I+L+DCLACSGCITSAE V++ +QS +E L     N+ K         + ++ +++ Q   SLA  + I      + L  + +SLG   +  T  + D+ L+E   EF+ RY         R N +L MLSS+CPGW+CYAE
Sbjct:    5 SRALQLTDIDDFITPSQMCIKPVKIDKAKSKTGAKIMIKDDSCFEESESGKKKLNKVEITLQDCLACSGCITSAEGVLITQQSQEELLRVLQENLTKKATEDWGNVRTIVFTIATQPLLSLAHRYQIGVEDSARHLAGYFRSLGADYVLSTKVADDIALLECRQEFVERY---------RENENLTMLSSSCPGWVCYAE 195          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_DROME (Probable cytosolic Fe-S cluster assembly factor CG17683 OS=Drosophila melanogaster GN=CG17683 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 75/202 (37.13%), Postives = 107/202 (52.97%), Query Frame = 3
Query:  156 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKA---------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            + S  L++ D+ DFI PSQ C+  V + KA  K   K ++        S S   +   V ISL+DCLACSGCITSAE V++ +QS +E L  +   +K KA         ++ +L+ Q   SLA  + I      + L  + +SLG   +  T  + D+ L+E   EF+ RY         R N +L MLSS+CPGW+CYAE
Sbjct:    3 RLSRALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDGCFEESESGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSKNKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY---------RENENLTMLSSSCPGWVCYAE 195          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_BRUMA (Probable cytosolic Fe-S cluster assembly factor Bm1_25010 OS=Brugia malayi GN=Bm1_25010 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 66/183 (36.07%), Postives = 111/183 (60.66%), Query Frame = 3
Query:  159 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ----QAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            FS  ++I ++SDFIAPSQ C++ L+        + +V + +K+      + V+++LKDCLACSGCITSAET+++++QS  +FL  + K +  ++++SPQS AS+A   G    +  + +     ++G+K + D+S  R LTL  + +EF       +ES  +R     P+ +  CPG++CYAE
Sbjct:    8 FSGIIKIANVSDFIAPSQACILPLQSKESDVEVQIRVRSRAKKVDDSAVKKVEVTLKDCLACSGCITSAETILIKEQSKPKFLEGLKKAQLSVMTVSPQSIASIAYKRGCHLSEAARLIARIFMNMGMKYVVDSSFGRLLTLSLSYDEF-------KESQLQR-----PIFTGVCPGFVCYAE 178          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NAR1_SCHPO (Cytosolic Fe-S cluster assembly factor NAR1 homolog OS=Schizosaccharomyces pombe GN=SPCC1450.10c PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 74/223 (33.18%), Postives = 108/223 (48.43%), Query Frame = 3
Query:  171 LRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQ--------VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA---VIISLSPQSRASLAEHFGISPLQVFKKL-TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDE----------------------------------RSNSSLPMLSSACPGWICYAE 695
            L + DL+DF++P   C+    +KK   KN  +            T    +     ISL DCLACSGCITSAETV++  QS  E L ++   K+   + +SLSPQ RA+LA ++G+S  ++   L   F+  LG  +I DT+ SR++ L +   EF   + QS+   ++                                    N+ LP+LSS+CPGWICY E
Sbjct:    4 LSVNDLNDFLSPGAVCIKPAQVKKQESKNDIRIDGDAYYEVTKDTGETSELGIASISLNDCLACSGCITSAETVLVNLQSYQEVLKHLESRKSQEILYVSLSPQVRANLAAYYGLSLQEIQAVLEMVFIGKLGFHAILDTNASREIVLQQCAQEFCNSWLQSRAHKNQNQVTNSVVNEHPLIPHSTSQISGVHSNTSSNSGINENAVLPILSSSCPGWICYVE 226          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_MOUSE (Nuclear prelamin A recognition factor OS=Mus musculus GN=Narf PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 3
Query:  249 NPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            +P K         +    KI L DCLAC  C+T  E V L +QS  +FL  +N        K + +++S+ PQS    A  F +S     ++L  FLKSLGV  +FDT+ + D +++E+  EF+ RY Q  E   E     LPML+SACPGW+ YAE
Sbjct:   35 SPAKESEEKGEFHKLADAKIFLSDCLACDSCVTVEEGVQLSQQSAKDFLHVLNLNKRCDTSKHRVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRE-----LPMLTSACPGWVRYAE 186          
BLAST of DN135204 vs. ExPASy Swiss-Prot
Match: NARF_RAT (Nuclear prelamin A recognition factor OS=Rattus norvegicus GN=Narf PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 62/160 (38.75%), Postives = 88/160 (55.00%), Query Frame = 3
Query:  255 DKPQVSTSSKQQAE-----PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 695
            D P  +  ++++ E       KI L DCLAC  C+T  E V L +QS  +F   +N        K K +++S+ PQS    A  F +S     ++L  FLKSLGV  +FDT+ + D +++E+  EF+ RY Q  E   E     LPML+SACPGW+ YAE
Sbjct:   26 DVPSPAQENEEKGEFHKLADAKIFLSDCLACDSCVTVEEGVQLSQQSAKDFFHVLNLNKRCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRE-----LPMLTSACPGWVRYAE 180          
The following BLAST results are available for this feature:
BLAST of DN135204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
NARF_DROSE9.766e-2837.62Probable cytosolic Fe-S cluster assembly factor GM... [more]
NARFL_DANRE9.766e-2850.39Cytosolic Fe-S cluster assembly factor narfl OS=Da... [more]
NARF_DROWI1.275e-2735.47Probable cytosolic Fe-S cluster assembly factor GK... [more]
NARF_DROSI1.666e-2737.62Probable cytosolic Fe-S cluster assembly factor GD... [more]
NARF_DROER4.847e-2736.50Probable cytosolic Fe-S cluster assembly factor GG... [more]
NARF_DROME1.080e-2637.13Probable cytosolic Fe-S cluster assembly factor CG... [more]
NARF_BRUMA6.999e-2636.07Probable cytosolic Fe-S cluster assembly factor Bm... [more]
NAR1_SCHPO1.724e-2433.18Cytosolic Fe-S cluster assembly factor NAR1 homolo... [more]
NARF_MOUSE3.840e-2438.85Nuclear prelamin A recognition factor OS=Mus muscu... [more]
NARF_RAT5.016e-2438.75Nuclear prelamin A recognition factor OS=Rattus no... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca07g11 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135204 ID=DN135204; Name=DN135204; organism=Citrus sinensis; type=EST; length=696bp
AGGTCCTCCATTTTTNNNNTTTCTACAGAATTAATCTACCCCCTCCAAAA
AATAAAAAATAAAAAAATCCCTAAAATTGAGCTCTGAATTAATCGCCGTT
TGTTTAATCAATTCGGCGGATGCAGTGTTAAGTTGAAGAAAGAGAAATGT
CAGAGAAGTTCTCGCCTACGCTGAGAATCGGAGATCTCAGCGATTTTATA
GCACCGTCTCAGAATTGCGTTGTTTCTCTTAAAAAAGCTACCTTTAAAAA
CCCTGATAAGCCCCAGGTTTCTACTTCCAGCAAGCAGCAGGCTGAACCGG
TGAAAATCTCACTCAAGGATTGCTTAGCTTGCAGTGGATGCATTACGTCA
GCGGAGACTGTGATGCTTGAGAAGCAGAGTTTGGATGAGTTCCTATCAAA
TATTAATAAAGGAAAGGCTGTTATTATTTCCCTTTCTCCACAGTCAAGAG
CTTCCCTTGCTGAACATTTTGGCATCTCTCCTCTTCAGGTTTTCAAGAAA
CTTACAACATTCTTGAAGTCGCTTGGAGTGAAGAGCATCTTTGATACGAG
CTGCAGTAGAGACTTAACGCTTATTGAAGCTTGCAATGAGTTTATTGCTC
GCTACAAACAAAGCCAAGAATCTGATGATGAAAGGTCCAATTCATCCCTG
CCCATGCTGTCATCGGCATGTCCAGGGTGGATATGCTATGCTGAAA
back to top