DN135200

Overview
NameDN135200
Unique NameDN135200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:307..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.845e-12
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 2 
Query:   86 VKIGINGFGRIGRLVARVILQ---RDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-----GEKP-VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPE 511
            +K+ INGFGRIGR V R + +      + +VAVN+     + M ++ +YDS HG++      V  D+  LF     GE+  + +    +   +PW +   + V++ TGV+  ++    H+K GAKKV+ S P+ +      + GVN      E
Sbjct:    3 LKVAINGFGRIGRSVLRALYESGKHHHINVVAVNE-LAEPEAMAHLLQYDSSHGRFFK---PVSHDQEHLFIAHENGERDDIRILHQSDITLLPWHDLDVDIVLDCTGVYGSREDGLAHIKAGAKKVLFSHPAANDIDNTIIYGVNHKTLTSE 151
[Close]
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: E4PD_VIBCH (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae GN=epd PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 41/132 (31.06%), Postives = 72/132 (54.55%), Query Frame = 2 
Query:   86 VKIGINGFGRIGRLVARVILQ---RDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-----GE-KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAP 454
            +++ INGFGRIGR V R + +   RD + +VAVN+     D M ++ +YD+ HG++     K+  D+  ++     GE   + +  +     +PW + G + V++ TGV+  ++    H+  GAK V+ S P
Sbjct:    2 LRVAINGFGRIGRNVLRAVYESGKRDRIQVVAVNE-LAKPDAMAHLLQYDTSHGRFGK---KISHDQQHIYVHHQNGEYDSIRILHLSEIPLLPWRDLGVDLVLDCTGVYGCQEDGQQHIDAGAKLVLFSHP 129
[Close]
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: E4PD_VIBC3 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=epd PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 41/132 (31.06%), Postives = 72/132 (54.55%), Query Frame = 2 
Query:   86 VKIGINGFGRIGRLVARVILQ---RDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-----GE-KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAP 454
            +++ INGFGRIGR V R + +   RD + +VAVN+     D M ++ +YD+ HG++     K+  D+  ++     GE   + +  +     +PW + G + V++ TGV+  ++    H+  GAK V+ S P
Sbjct:    2 LRVAINGFGRIGRNVLRAVYESGKRDRIQVVAVNE-LAKPDAMAHLLQYDTSHGRFGK---KISHDQQHIYVHHQNGEYDSIRILHLSEIPLLPWRDLGVDLVLDCTGVYGCQEDGQQHIDAGAKLVLFSHP 129
The following BLAST results are available for this feature:
BLAST of DN135200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 343
Match NameE-valueIdentityDescription
E4PD_PHOPR6.845e-1230.72D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]
E4PD_VIBCH3.397e-1131.06D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_VIBC33.397e-1131.06D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]

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Properties
Property NameValue
Genbank descriptionwca07g07 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135200 ID=DN135200; Name=DN135200; organism=Citrus sinensis; type=EST; length=514bp
GGGGACGACTGCTCTCCCTACTCTCTACAACTTTCTTCACCACTCATTCA
CCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATC
AACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAG
GGACGATGTTGGACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATT
ACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCAC
CATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCC
TGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGA
CTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACTGACAAGGAT
AAGGCTGCTGTCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGC
CCCCAGCAAGGATGCTCCTATGTTTGTTGTCGGTGTCAATGAAAACGAGT
ACAAACCAGAGCTC
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