DN135200

Overview
NameDN135200
Unique NameDN135200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:307..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.115e-41
Identity = 87/149 (58.39%), Postives = 107/149 (71.81%), Query Frame = 2
Query:   77 MGKVKIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKH---HE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEY 502
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT  +KA  HLKGGAKKVIISAPS DAPMFVVGVN  +Y
Sbjct:    1 MTKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 4.115e-41
Identity = 87/149 (58.39%), Postives = 107/149 (71.81%), Query Frame = 2
Query:   77 MGKVKIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKH---HE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEY 502
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT  +KA  HLKGGAKKVIISAPS DAPMFVVGVN  +Y
Sbjct:    1 MPKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.374e-41
Identity = 83/143 (58.04%), Postives = 103/143 (72.03%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPEL 514
            VK+G+NGFGRIGRLV R  +    V +VA+NDPFI  +YM YMFKYDS HG +K   +K ++ K ++ G   +T+F  R+P  I W + GAEYVVESTGVFT  +KA  HLKGGAK+VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKG-TVKAENGKLVINGNA-ITIFQERDPSNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDKSL 142          
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 7.018e-41
Identity = 86/142 (60.56%), Postives = 105/142 (73.94%), Query Frame = 2
Query:   89 KIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPEL 514
            KIGINGFGRIGRLV R  L      +VAVNDPFI  +YM YMFKYDS HG +K  E+K++D   ++ G+K +TVF    PE IPW++ GAEY+VESTGVFT  +KA+ H KGGAKKV+ISAPS DAPMFV GVN  +Y  ++
Sbjct:    2 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFKG-EVKMEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAPSADAPMFVCGVNLEKYSKDM 140          
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 166.007 bits (419), Expect = 9.166e-41
Identity = 82/143 (57.34%), Postives = 102/143 (71.33%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPEL 514
            VK+G+NGFGRIGRLV R       V +VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R+P  I W + GA YVVESTGVFT  +KA  HLKGGAK+VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.197e-40
Identity = 83/143 (58.04%), Postives = 103/143 (72.03%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPEL 514
            VK+GINGFGRIGRLV R       V +VA+NDPFI  DYM YMF+YDS HG++K  E+K +  K ++ G   +TV+  R+P  I W + GA YVVESTGVFT  +KA+ H+KGGAK+VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHGKYKG-EVKAEGGKLVIDGHA-ITVYSERDPANIKWGDAGATYVVESTGVFTTIEKASAHIKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 165.622 bits (418), Expect = 1.197e-40
Identity = 82/143 (57.34%), Postives = 103/143 (72.03%), Query Frame = 2
Query:   86 VKIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPEL 514
            VK+G+NGFGRIGRLV R       V +VA+NDPFI   YM YMF+YDS HG++ +  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT  +KA  HLKGGAK+VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYNNTL 142          
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.197e-40
Identity = 83/146 (56.85%), Postives = 104/146 (71.23%), Query Frame = 2
Query:   77 MGKVKIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPEL 514
            M   K+GINGFGRIGR+V R  +   DV +VAVNDPFI T Y  YM KYDS HG+++   ++  D+  ++ G+K +  F  R+P  IPW   GA Y+VESTGVFT  +KA+ HLKGGAKKVIISAPS DAPMFV+GVN  EYK ++
Sbjct:    1 MATPKVGINGFGRIGRIVFRNAIASGDVDVVAVNDPFIETHYAAYMLKYDSTHGRFQG-TIETYDEGLIVNGKK-IRFFAERDPAAIPWGSAGAAYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNKEYKTDI 144          
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.197e-40
Identity = 81/142 (57.04%), Postives = 104/142 (73.24%), Query Frame = 2
Query:   89 KIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPEL 514
            K+GINGFGRIGR+V R  +   +V +VAVNDPFI T Y  YM KYDS HGQ+K   ++  ++  ++ G+K +  F  R+P  IPW  TGA+Y+VESTGVFT ++KAA HLKGGAKKV+ISAPS DAPMFV+GVN   Y  ++
Sbjct:    4 KVGINGFGRIGRIVFRNAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHGQFKG-TIETYEEGLIVNGKK-IRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPSADAPMFVMGVNNTSYTKDI 143          
BLAST of DN135200 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.197e-40
Identity = 82/143 (57.34%), Postives = 98/143 (68.53%), Query Frame = 2
Query:   80 GKVKIGINGFGRIGRLVARVILQRDDVGLVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAVHLKGGAKKVIISAPSKDAPMFVVGVNENEYKP 508
            GK+KIGINGFGRIGRLV R  + R D+ +VA+NDPFI  +YM YMFKYDSVH  W  H    KD    L   + +  F   +P +I W   GA+ V+ESTGVFTD  KA  HL GGAKKVII+APS DAPM+V+GVN  +Y P
Sbjct:    3 GKIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKDG--FLVEGRKIHTFTESDPSKINWGAAGADIVIESTGVFTDIAKATAHLTGGAKKVIITAPSNDAPMYVMGVNHEKYNP 143          
The following BLAST results are available for this feature:
BLAST of DN135200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 343
Match NameE-valueIdentityDescription
G3P3_CAEEL4.115e-4158.39Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL4.115e-4158.39Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_COTJA5.374e-4158.04Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_HOMAM7.018e-4160.56Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_PIG9.166e-4157.34Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_DANRE1.197e-4058.04Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_BOVIN1.197e-4057.34Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P_ASPOR1.197e-4056.85Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_ASPNG1.197e-4057.04Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3PC_CHLRE1.197e-4057.34Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionwca07g07 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135200 ID=DN135200; Name=DN135200; organism=Citrus sinensis; type=EST; length=514bp
GGGGACGACTGCTCTCCCTACTCTCTACAACTTTCTTCACCACTCATTCA
CCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATC
AACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAG
GGACGATGTTGGACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATT
ACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCAC
CATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCC
TGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGA
CTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACTGACAAGGAT
AAGGCTGCTGTCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGC
CCCCAGCAAGGATGCTCCTATGTTTGTTGTCGGTGTCAATGAAAACGAGT
ACAAACCAGAGCTC
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