DN135197

Overview
NameDN135197
Unique NameDN135197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_CAEBR (40S ribosomal protein SA OS=Caenorhabditis briggsae GN=rps-0 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.740e-56
Identity = 100/178 (56.18%), Postives = 136/178 (76.40%), Query Frame = 1
Query:  124 EADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            E D+  +LA + HLG+ N +FQM++YV+KRR DG  IIN+ KTWEKL +AAR I A+ENP D++V SARPY QRA+LKFA +T A AI GR +PG  TNQ+Q +F EPRLL+++DPR DHQ + EA+    P I+F +T+SP++ +DIG+P NNKG+ SIG ++W+LAR +L +RG I
Sbjct:   12 EEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLLAARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKI 189          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_CANDC (40S ribosomal protein S0 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.885e-56
Identity = 109/195 (55.90%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVM 684
            P        D +++LAA VHLG KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I A+ N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  N P IA  D DSP  YVD+ IP NNKGKHSIG ++WL+AR VL++RG I     +W VM
Sbjct:    4 PASFDLTPEDAKLLLAANVHLGAKNVQVHNKPYVYKTRPDGMNIINIGKTWEKIVLAARIIAAVPNASDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLIAREVLRLRGIIPDRTTEWSVM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_CANTR (40S ribosomal protein S0 OS=Candida tropicalis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.380e-56
Identity = 110/195 (56.41%), Postives = 135/195 (69.23%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVM 684
            P        D +++LA  VHLG+KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I AI N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  N P IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL+ RG I     +W VM
Sbjct:    4 PASFDLTPEDAKLLLAGNVHLGSKNVQVHNKPYVYKTRPDGVNIINIGKTWEKIVLAARIIAAIPNANDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRSRGIIPDRTTEWSVM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_KLULA (40S ribosomal protein S0 OS=Kluyveromyces lactis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.088e-55
Identity = 104/185 (56.22%), Postives = 133/185 (71.89%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            P        D Q++LAA VHLG KN     E YV+K R DG+ +IN+GKTWEK+ +AAR+I AI NP D++  S+R YGQRAVLK+A +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKE++  N P IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG +
Sbjct:    4 PSTFDLTSEDAQLLLAARVHLGAKNVQVHQEPYVYKARPDGVNVINVGKTWEKIVLAARIIAAIPNPEDVVAISSRTYGQRAVLKYAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKESSYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGAL 188          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_PICGU (40S ribosomal protein S0 OS=Pichia guilliermondii GN=RPS0 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.856e-55
Identity = 110/195 (56.41%), Postives = 135/195 (69.23%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVM 684
            P        D +++LAA VHLG+KN     + YV+K R DG+ +IN+GKTWEK+ +AAR I AI N  D+ V S+R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  N P IA  D DSP  YVDI IP NNKGKHSIG ++WLLAR VL++RG I     +W VM
Sbjct:    4 PASFDLTAEDAKLLLAANVHLGSKNVIVHNKPYVYKTRPDGVNVINIGKTWEKIVLAARTIAAIPNAADVAVCSSRTFGQRAVLKFAAHTGATPIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPTDYVDIAIPCNNKGKHSIGLIWWLLAREVLRLRGIIPDRSTEWSVM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_DEBHA (40S ribosomal protein S0 OS=Debaryomyces hansenii GN=RPS0 PE=3 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.424e-55
Identity = 106/186 (56.99%), Postives = 134/186 (72.04%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVM 684
            D +++LAA VHLG+KN     + YV+K R DG+ +IN+GKTWEK+ +AAR+I AI N  D+ V S R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+++TDPRTD Q IKE++  N P IA  D DSP  YVD+ IP NNKGKHSIG ++WL+AR VL++RG I     +W VM
Sbjct:   13 DAKLLLAANVHLGSKNVQVHNKPYVYKTRPDGVNVINVGKTWEKIVLAARIIAAIPNAADVAVCSTRTFGQRAVLKFAAHTGATPIAGRFTPGNFTNYITRSFKEPRLVVVTDPRTDFQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLVAREVLRLRGIIPDRTTEWSVM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA2_YEAST (40S ribosomal protein S0-B OS=Saccharomyces cerevisiae GN=RPS0B PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.424e-55
Identity = 105/186 (56.45%), Postives = 133/186 (71.51%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVM 684
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR D Q IKEA+  N P IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA2_YEAS7 (40S ribosomal protein S0-B OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS0B PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.424e-55
Identity = 105/186 (56.45%), Postives = 133/186 (71.51%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVM 684
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR D Q IKEA+  N P IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA2_YEAS1 (40S ribosomal protein S0-B OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS0B PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.424e-55
Identity = 105/186 (56.45%), Postives = 133/186 (71.51%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVM 684
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR D Q IKEA+  N P IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA1_YEAST (40S ribosomal protein S0-A OS=Saccharomyces cerevisiae GN=RPS0A PE=1 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 4.135e-55
Identity = 104/186 (55.91%), Postives = 134/186 (72.04%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVM 684
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R +GQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  N P IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIM 198          
The following BLAST results are available for this feature:
BLAST of DN135197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_CAEBR3.740e-5656.1840S ribosomal protein SA OS=Caenorhabditis briggsa... [more]
RSSA_CANDC4.885e-5655.9040S ribosomal protein S0 OS=Candida dubliniensis (... [more]
RSSA_CANTR6.380e-5656.4140S ribosomal protein S0 OS=Candida tropicalis GN=... [more]
RSSA_KLULA1.088e-5556.2240S ribosomal protein S0 OS=Kluyveromyces lactis G... [more]
RSSA_PICGU1.856e-5556.4140S ribosomal protein S0 OS=Pichia guilliermondii ... [more]
RSSA_DEBHA2.424e-5556.9940S ribosomal protein S0 OS=Debaryomyces hansenii ... [more]
RSSA2_YEAST2.424e-5556.4540S ribosomal protein S0-B OS=Saccharomyces cerevi... [more]
RSSA2_YEAS72.424e-5556.4540S ribosomal protein S0-B OS=Saccharomyces cerevi... [more]
RSSA2_YEAS12.424e-5556.4540S ribosomal protein S0-B OS=Saccharomyces cerevi... [more]
RSSA1_YEAST4.135e-5555.9140S ribosomal protein S0-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionwca07g03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135197 ID=DN135197; Name=DN135197; organism=Citrus sinensis; type=EST; length=687bp
GGGGATCCAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGNGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGACACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACACTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTC
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