DN135197

Overview
NameDN135197
Unique NameDN135197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_ECHGR (40S ribosomal protein SA OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.509e-52
Identity = 98/192 (51.04%), Postives = 136/192 (70.83%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            L  KE DI++M+AA+VHLG+ N ++QM++YV+ R ++G +II+L KTWEKL +AAR I AIENP D+++   +P  QR  LKF  YT   ++ GR TPG FTNQ+Q+ F EPRLLI+ DP+ DHQP++E +  N P I FC+TDSP++ VDIGIP NN  K+SI  + W+LAR V ++ G        DV++
Sbjct:    8 LELKEDDIRLMVAAKVHLGSTNANYQMQQYVYDRNDEGNHIIHLNKTWEKLLLAARAICAIENPADVVIIGGQPTWQRGALKFGHYTGTTSVPGRFTPGAFTNQIQSGFKEPRLLIVCDPKGDHQPVREGSAVNIPVIGFCNTDSPLQCVDIGIPCNN-DKYSIALMLWMLAREVRRIWGLDPRSQPGDVIM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_SCHJA (40S ribosomal protein SA OS=Schistosoma japonicum GN=SJCHGC06078 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.731e-51
Identity = 97/185 (52.43%), Postives = 126/185 (68.11%), Query Frame = 1
Query:  130 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 684
            D+++MLAA VH+G  N +FQM  YV  R  D  +II L KTWEK+ ++AR I AI+   D+    +RP+ QRAVLKFA YT A A+AGR TPG FTNQ Q+ F EPRLL+++DP +DHQ + EA+  N P IA C+TDSP+  VDI IP NNK  HSI  ++W LAR V ++RG      +W V+
Sbjct:   14 DLRLMLAAHVHVGETNMNFQMSTYVHGRTKDNFHIIKLDKTWEKILLSARAIAAIDTASDVFAIGSRPFSQRAVLKFANYTGATAMAGRFTPGAFTNQKQSCFREPRLLVVSDPLSDHQAVMEASSVNVPLIALCNTDSPLTRVDIVIPCNNKSTHSIAVVWWFLAREVRRIRGEDTRLQQWSVL 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_STRPU (40S ribosomal protein SA (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.758e-40
Identity = 74/122 (60.66%), Postives = 97/122 (79.51%), Query Frame = 1
Query:  322 SARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            S+RPYGQRAVLKF  +T A  +AGR+TPGTFTNQ+Q +F EPR+LI+TDPR+DHQP+ EA+  N P IA C++DSP+R+VDI IP NNK  HSIG ++W+L+R VL++RG I     W++MV
Sbjct:    1 SSRPYGQRAVLKFGAHTGATPVAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNSDSPLRHVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMV 122          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_SULSO (30S ribosomal protein S2P OS=Sulfolobus solfataricus GN=rps2p PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.865e-39
Identity = 83/189 (43.92%), Postives = 128/189 (67.72%), Query Frame = 1
Query:  115 SQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            S+K A I+++      L+A VH+GT +C   ME +V++ R +G+Y++++ K  E+L++AA+ +   + P DIIV ++RPY  R V KFA+   + A+ GR  PGTFTN   +++ EP++L+++DPRTD Q IKEAA    P +AF DTD+ + Y+D+ IPANNKG+ S+  L+W LAR +L+ R  I P
Sbjct:   27 SEKGAIIELLVPVDTYLSAGVHIGTHSCTKYMESFVYRVRAEGLYVLDVRKIDERLRIAAKFLSRYD-PQDIIVVASRPYAYRPVQKFAEVVGSRALVGRIIPGTFTNPYLSTYIEPKVLLVSDPRTDTQAIKEAAKVGIPIVAFADTDAKIDYIDLIIPANNKGRKSLALLYWALARQILRERRVIPP 214          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METS3 (30S ribosomal protein S2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps2p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.436e-39
Identity = 76/182 (41.76%), Postives = 120/182 (65.93%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            +S+   ++   LAA +H+GT+     ME+Y+F+ R+DG+Y++++ KT E+++  A+++   + P DI+V + R YGQ  V KF + T A  I GR  PGT TN     F EP+++++TDPR+D Q + E+     P IA CDT++ + +VDI IP NNKG+ +I  ++WLLAR +L+ RGTI
Sbjct:    1 MSELLIELDNYLAAGLHIGTQQKTSDMEKYIFRVRSDGLYVLDIQKTDERIRQIAKLLARYD-PEDILVVATRQYGQAPVKKFGEVTGAKTIPGRFIPGTLTNPTYAKFIEPKIIVVTDPRSDAQAVLESKQNGIPVIALCDTENLLSFVDIAIPVNNKGRKAIALVYWLLARQILRERGTI 181          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_STAMF (30S ribosomal protein S2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.746e-37
Identity = 82/196 (41.84%), Postives = 119/196 (60.71%), Query Frame = 1
Query:   76 KMATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            K A  T T P  + +    ++  LAA VH+GT  C   ME +V++ RNDG+YI+++ K  E++++AA+ +   E P  I   S R YGQ+ V+KF  Y       GR  PGTFTN     + EP +++LTDPR D Q +KEAA    P ++  DTD+   Y+D+ IPANNKG+ S+  ++WLLAR +L+ RG + P
Sbjct:   11 KSAEKTQTKP--VIELLIPLEKYLAAGVHIGTHICTKFMEPFVYRVRNDGLYILDVRKIDERIRIAAKFLSRYE-PSKIAAVSVRTYGQKPVVKFCNYVGCKPFTGRFMPGTFTNPSLKWYFEPDIVLLTDPRADSQALKEAAEIGIPIVSLADTDNRTEYIDLIIPANNKGRKSLALIYWLLARQILRERGLLPP 203          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_PYRHO (30S ribosomal protein S2P OS=Pyrococcus horikoshii GN=rps2p PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.889e-37
Identity = 75/185 (40.54%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   E P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP ++I+TDPR DHQ +KEA     P +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I    ++ + V
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPEVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPV 192          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_PYRFU (30S ribosomal protein S2P OS=Pyrococcus furiosus GN=rps2p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.663e-37
Identity = 75/185 (40.54%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   E P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP +LI+TDPR DHQ ++EA     P +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I+    + + V
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEIQSREDFKIPV 192          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_PYRAB (30S ribosomal protein S2P OS=Pyrococcus abyssi GN=rps2p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 74/185 (40.00%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   + P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP ++I+TDPR DHQ +KEA     P +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I    ++ + V
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFD-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPV 192          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_PYRKO (30S ribosomal protein S2P OS=Pyrococcus kodakaraensis GN=rps2p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 77/185 (41.62%), Postives = 115/185 (62.16%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   + P  I+  S R YGQR V KF + T A AI GR  PGT TN    +F EP +LI+TDPR DHQ +KEA     P +A  DT++ + YVDI IP NNKG+ ++  ++W+LAR VL  R  I     + + V
Sbjct:    8 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLRVAGKFLAKFD-PESILAVSVRLYGQRPVKKFGEVTGAKAIPGRFLPGTMTNPQVKNFIEPDVLIVTDPRADHQALKEAVEIGIPIVALVDTENFLSYVDIAIPTNNKGRKALALIYWILAREVLYNRKEIESREDFKIPV 191          
The following BLAST results are available for this feature:
BLAST of DN135197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ECHGR2.509e-5251.0440S ribosomal protein SA OS=Echinococcus granulosu... [more]
RSSA_SCHJA4.731e-5152.4340S ribosomal protein SA OS=Schistosoma japonicum ... [more]
RSSA_STRPU3.758e-4060.6640S ribosomal protein SA (Fragment) OS=Strongyloce... [more]
RS2_SULSO1.865e-3943.9230S ribosomal protein S2P OS=Sulfolobus solfataric... [more]
RS2_METS32.436e-3941.7630S ribosomal protein S2P OS=Methanobrevibacter sm... [more]
RS2_STAMF1.746e-3741.8430S ribosomal protein S2P OS=Staphylothermus marin... [more]
RS2_PYRHO3.889e-3740.5430S ribosomal protein S2P OS=Pyrococcus horikoshii... [more]
RS2_PYRFU8.663e-3740.5430S ribosomal protein S2P OS=Pyrococcus furiosus G... [more]
RS2_PYRAB1.478e-3640.0030S ribosomal protein S2P OS=Pyrococcus abyssi GN=... [more]
RS2_PYRKO1.930e-3641.6230S ribosomal protein S2P OS=Pyrococcus kodakaraen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca07g03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135197 ID=DN135197; Name=DN135197; organism=Citrus sinensis; type=EST; length=687bp
GGGGATCCAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGNGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGACACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACACTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTC
back to top