DN135197

Overview
NameDN135197
Unique NameDN135197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METS5 (30S ribosomal protein S2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps2p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.521e-36
Identity = 79/191 (41.36%), Postives = 120/191 (62.83%), Query Frame = 1
Query:  109 QLSQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            Q  +K A I+++      L+A VH+GT  C   MER++++ R +G+Y++++ K  E+L++AA+ +   + P  I+  ++RPY    V KFA+   A A+ GR  PG  TN     F EP +L+++DPRTD Q IKEAA    P +AF DTD+ + YVD+ IP+NNKG+ S+  L+W LAR +L+ R  I P
Sbjct:   19 QRGEKGAIIELLVPLENYLSAGVHIGTHTCTRYMERFIYRVRPEGLYVLDVRKIDERLRVAAKFLSRFQ-PQSILAVASRPYAFTPVQKFAEVVGARAVVGRMVPGMLTNPYLEDFIEPEVLLVSDPRTDTQAIKEAADMGIPVVAFSDTDAKVDYVDLVIPSNNKGRKSLALLYWALARQILRERKEIAP 208          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_THEPD (30S ribosomal protein S2P OS=Thermofilum pendens (strain Hrk 5) GN=rps2p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.292e-36
Identity = 80/198 (40.40%), Postives = 117/198 (59.09%), Query Frame = 1
Query:   70 EIKMATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            E+K+  G    P         ++M LAA + +GTK     ME +++  R DG+Y++++ KT E++++AA++I   + P   +V S R YG R V KF        + GR  PGTFTN   + F E  L+++TDPR D Q + EA     P IA CDTDSP+  VD+ IP NN+G+ ++  +FWLLAR VL++RG I P
Sbjct:    5 ELKLLEGQLLIP---------LEMYLAAGIRIGTKMKSKFMEPFIYSARPDGLYLLDVKKTDERIRIAAKMIARYD-PSKFVVVSGRQYGHRPVRKFCGLVGCKPMLGRVLPGTFTNPALSHFTEADLMMVTDPRVDEQAVVEAGTMGIPVIALCDTDSPISNVDLIIPTNNRGRKALALIFWLLAREVLRIRGDIPP 192          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METST (30S ribosomal protein S2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps2p PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 73/190 (38.42%), Postives = 119/190 (62.63%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDV 681
            +S+    +   LAA +H+GT+     ME+Y+++ R DG++++++  + +K+ +AA+++   E P DI+V S R YGQ  V KF + T    I GR  PGT TN     F EP++L++TDPR+D Q + EA     P +A CDT++ +  VD+ IP NNKG+ +I  ++WLLAR +L+ RG +    ++D+
Sbjct:    1 MSELLIPLDKYLAAGLHIGTQQKTKDMEKYIYRVRADGLHVLDVKSSNDKIIVAAKLLSKYE-PDDILVVSTRQYGQSPVKKFGEVTGTKTIPGRFIPGTLTNPQYAKFIEPKILVVTDPRSDSQAVIEAKQNGIPVVALCDTENLLCNVDVVIPVNNKGRKAIALVYWLLARQILRERGILSSDEEFDL 189          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_SULTO (30S ribosomal protein S2P OS=Sulfolobus tokodaii GN=rps2p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 80/194 (41.24%), Postives = 120/194 (61.86%), Query Frame = 1
Query:  100 APRQLSQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            A  Q S+K A I+++      L+A VH+GT  C   ME++V++ R +G+Y++++ K  E+L++AAR +     P +I+  ++RPY    V KFA+     AI GR  PG  TN    +  EP +++ TDPRTD Q IKEA+    P +AF DTD+ + +VD  IPANNKG+ S+  L+W+LAR +L+ R  I P
Sbjct:   16 AELQKSEKGAVIELLVPLDTYLSAGVHIGTHTCTKYMEKFVYRVRPEGLYVLDVRKIDERLRIAARFLSRF-TPENILAVTSRPYAFTPVTKFAEVIRGRAIVGRFPPGILTNPQLPNHIEPEVIVATDPRTDLQAIKEASKVGIPVVAFADTDAKVDFVDFIIPANNKGRKSLALLYWVLARQILRERREIPP 208          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METTH (30S ribosomal protein S2P OS=Methanobacterium thermoautotrophicum GN=rps2p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 75/190 (39.47%), Postives = 115/190 (60.53%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDV 681
            +S+    +   LAA +H+GT+     ME+Y+++ R+DG+Y++++ KT +++  A++ +   E P DI+  S R YGQ  V KF + T A  I GR  PGT TN     F EP +L+ TDPR+D Q I EA     P +A CDT++ +  VDI IP NNKG+ +I  ++WLLAR  L+ +G ++     D+
Sbjct:    1 MSELLIPLDKYLAAGLHIGTQQKTADMEKYIYRVRSDGLYVLDIRKTNDRVIAASKFLSKYE-PDDILAVSTRQYGQEPVRKFGEVTGARTIPGRFIPGTLTNPNYAKFIEPEVLVATDPRSDSQAIIEAKQIGIPVVALCDTENLLGNVDIAIPVNNKGRKAIALVYWLLARQFLREKGILKEDEDLDI 189          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_HYPBU (30S ribosomal protein S2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps2p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.634e-35
Identity = 73/175 (41.71%), Postives = 110/175 (62.86%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            ++  L+A VH+GT  C   M ++V++ R DG+YI+++ KT E+L++AA+ +   E P  I+  S R YGQR V KF  Y    AI GR  PGTFTN     + EP ++++TDPR D Q + EAA    P +A  DTD+ +  +D+ IP NNKG+ S+  ++W+L R +L+ +G I
Sbjct:   23 LERYLSAGVHIGTHICTAYMRKFVYRVRPDGLYILDIRKTDERLRVAAKFLARFE-PSKIVAVSVRQYGQRPVQKFCTYIGCKAITGRILPGTFTNPSLEWYVEPDVIVVTDPRADSQAVDEAARMGIPVVALTDTDNRVENIDLVIPVNNKGRKSLALVYWILTREILREQGKI 196          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_THEAC (30S ribosomal protein S2P OS=Thermoplasma acidophilum GN=rps2p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 76/167 (45.51%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  157 VHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            VH+GT+     M+ Y+FK RNDG+YI+++ KT  KL +A +++   E P DI+V + R Y  R V KFA+ T A AI GR  PGT TN     + E +++I+TDP  D Q +KEA     P IA CD ++   +VD+ IP NNKG+ S+  ++WLLAR +L+ RGTI
Sbjct:   17 VHIGTQVKSSDMKPYIFKIRNDGLYILDVKKTNSKLIVAGKMLARFE-PQDILVVAQRQYAFRPVAKFAEVTGATAITGRFNPGTLTNPSLKFYKEVKVIIVTDPLADVQAMKEAVKIGIPIIALCDANNKTDFVDLIIPTNNKGRRSLAVIYWLLAREILKNRGTI 182          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_SULAC (30S ribosomal protein S2P OS=Sulfolobus acidocaldarius GN=rps2p PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 72/171 (42.11%), Postives = 112/171 (65.50%), Query Frame = 1
Query:  145 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            L+A VH+GT  C   MER++++ R +G+Y++++ K  E+L++AA+ I     P  ++  ++RPY    V KF++      I+GR  PGT TN    ++ EP +LI+TDPRTD Q IKEA+    P +AF DTD+ + ++D+ IPANNKG+ S+  L+W+LAR +L+ R  I
Sbjct:   37 LSAGVHIGTHTCTRYMERFIYRVRPEGLYVLDVRKIDERLRVAAKFISRFR-PEAVLTVASRPYAFTPVQKFSEVVRGKEISGRFPPGTLTNPYLDNYIEPEVLIVTDPRTDLQAIKEASKVGIPIVAFTDTDARVDFIDVIIPANNKGRKSLALLYWVLARQILRERKEI 206          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_ENTBH (40S ribosomal protein S0 OS=Enterocytozoon bieneusi (strain H348) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 70/167 (41.92%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  136 QMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMV 636
            +++LA + HLG       M++Y++  R D + + +L KTW+K  +AAR    +    D+ V S + +G++ VLKFA+ T A +  GR  PG+FTN    +  EPRL+I++DP  D Q I+EAA  N PTIAFC+TD  ++YVDI IP NN+   +IG  F++L+R++
Sbjct:   14 KLLLATQAHLGGVKVTKPMKKYIYGERQDKVSVFDLKKTWDKFILAARAFCGLNYGDDVTVISCKTFGKKPVLKFAETTGAKSYTGRFIPGSFTNTTIRNSCEPRLIIVSDPIVDKQAIEEAAKVNCPTIAFCNTDCDLKYVDIAIPLNNRSPKAIGASFFILSRII 180          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METKA (30S ribosomal protein S2P OS=Methanopyrus kandleri GN=rps2p PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34
Identity = 72/178 (40.45%), Postives = 113/178 (63.48%), Query Frame = 1
Query:  145 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWD 678
            LAA VH+GT+     ME ++++ R DG+++I++ KT E++++AA  + ++ N  +I+V S R YGQ+ V KFA+ T   AI GR  PGT TN     + EP +++LTDPR D Q + EA     P +A CDTD+    VD+ IP NNKG+ ++  ++WLLAR +L+  G +    +++
Sbjct:   15 LAAGVHIGTQQKTKDMEPFIYRTRADGLHVIDVRKTDERIRIAANFL-SMYNTDEILVVSRRYYGQKPVSKFAEATGTTAIPGRFVPGTLTNPEYDGYLEPEVIVLTDPRADFQALVEAQSVGIPIVALCDTDNFTGNVDLAIPTNNKGRKALALVYWLLARELLKKLGRLEEDEEFE 191          
The following BLAST results are available for this feature:
BLAST of DN135197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_METS52.521e-3641.3630S ribosomal protein S2P OS=Metallosphaera sedula... [more]
RS2_THEPD3.292e-3640.4030S ribosomal protein S2P OS=Thermofilum pendens (... [more]
RS2_METST5.615e-3638.4230S ribosomal protein S2P OS=Methanosphaera stadtm... [more]
RS2_SULTO7.334e-3641.2430S ribosomal protein S2P OS=Sulfolobus tokodaii G... [more]
RS2_METTH9.578e-3639.4730S ribosomal protein S2P OS=Methanobacterium ther... [more]
RS2_HYPBU1.634e-3541.7130S ribosomal protein S2P OS=Hyperthermus butylicu... [more]
RS2_THEAC1.059e-3445.5130S ribosomal protein S2P OS=Thermoplasma acidophi... [more]
RS2_SULAC1.059e-3442.1130S ribosomal protein S2P OS=Sulfolobus acidocalda... [more]
RSSA_ENTBH1.806e-3441.9240S ribosomal protein S0 OS=Enterocytozoon bieneus... [more]
RS2_METKA8.965e-3440.4530S ribosomal protein S2P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionwca07g03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135197 ID=DN135197; Name=DN135197; organism=Citrus sinensis; type=EST; length=687bp
GGGGATCCAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGNGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGACACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACACTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTC
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