DN135197

Overview
NameDN135197
Unique NameDN135197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_IGNH4 (30S ribosomal protein S2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps2p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 76/178 (42.70%), Postives = 110/178 (61.80%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRN-DGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++M L   VH+GTK     M+R+V+KRRN DG+ I+++ K  +++++AA+ +   E P  I+V S R YG + V  FA++T A  + GR  PGT TN     + EP ++++TD R D Q I EAA    P +A CDTD+    VD+ IP NNKG+ S+  L+WLL R VL  RG + P
Sbjct:   16 LEMYLQHGVHIGTKMVTNYMKRFVYKRRNIDGLAILDVRKIDQRIRVAAKFLSRFE-PEKIMVVSVRQYGHKPVTMFAQFTGAKPVIGRFVPGTLTNPALEVYYEPDVILVTDTRMDQQAIVEAAEIGIPVVAICDTDNKTENVDLIIPGNNKGRKSLALLYWLLTRQVLVERGQLSP 192          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_THEVO (30S ribosomal protein S2P OS=Thermoplasma volcanium GN=rps2p PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 73/167 (43.71%), Postives = 106/167 (63.47%), Query Frame = 1
Query:  157 VHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            VH+GT+     M+ Y+FK RNDG+YI+++ KT  KL  A +++   + P DI+V + R Y  R V KFA+ T A +I GR  PGT TN     + E +++++TDP  D Q +KEA     P IA CD ++   +VD+ IP NNKG+ S+  ++WLLAR +L+ RGTI
Sbjct:   17 VHIGTQVKSSDMKPYIFKIRNDGLYILDVKKTNSKLIAAGKMLARFD-PQDILVVAQRQYAFRPVAKFAEVTGAVSITGRFNPGTLTNPSLKFYKEVKVIVVTDPLADVQAMKEAIKIGIPIIALCDANNKTDFVDLVIPTNNKGRRSLAVIYWLLAREILKNRGTI 182          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METJA (30S ribosomal protein S2P OS=Methanocaldococcus jannaschii GN=rps2p PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 69/184 (37.50%), Postives = 112/184 (60.87%), Query Frame = 1
Query:  112 LSQKE--ADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            +S+KE    +   LA+ +H+GT+     ME+++++ R+DG+Y++++ KT E+L++AA+ +   E P DI+  S R Y    + +F KYT    +AGR  PGT TN     F EP ++ ++DPR D Q +KEA     P +  CDT+    ++D+ IP NNKGK ++  +++LL R  L+ RG I
Sbjct:    1 MSEKELLVPLDTYLASGIHIGTQQKTKDMEKFIYRVRSDGLYVLDVRKTDERLRIAAKFLARYE-PEDILAVSRRIYTMGPLEEFGKYTGIRTVAGRFVPGTLTNPAYKGFMEPEVVFISDPRVDRQALKEATEIGVPIVGLCDTEHLTSFIDLVIPTNNKGKKAVALIYYLLTREYLKNRGVI 183          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_PYRAR (30S ribosomal protein S2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps2p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 73/179 (40.78%), Postives = 106/179 (59.22%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++  L+A V LGT+  +  +E   ++F  R DG+ I ++ K  E+L++AAR I     P  ++V + RPYG + V  F KY    A+ GR  PGT TN     + E  LL + DP+ D Q + EAA    P IA  DTD+P +Y+D  IP NNKG+ S+  +FW+LAR VL+ RG ++P
Sbjct:   13 LEKYLSAGVRLGTRLSNKYLEDRGFIFAVRPDGLRIFDIKKIDERLKIAARFIARYP-PDRVLVHTTRPYGFKPVQMFCKYVGCKALTGRFIPGTLTNPNLPHYQEADLLFVVDPKLDAQAVAEAAKMGVPVIALVDTDTPHQYIDFMIPCNNKGRKSLALIFWILARQVLRERGELKP 190          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METTP (30S ribosomal protein S2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps2p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 71/173 (41.04%), Postives = 105/173 (60.69%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651
            I   LAA VH+GT+     M +Y+++ R DG+Y++++  T +++++A + +   E P  I+V SAR YGQR    FAK   A A  GR  P T TN     + EP +L++TDP  D Q +KEA     P +A CDT++    VD+ IP NNKG+ ++  ++WLLAR VL+ RG
Sbjct:   19 IDEYLAAGVHIGTQQKTSDMMKYIYRVRTDGLYVLDVQATDKRIRLAGKFLANYE-PSKILVVSARQYGQRPATMFAKAVGARANVGRFIPNTLTNPHFAGYIEPDVLLVTDPAGDGQAVKEAVDIGIPVVALCDTNNMTSNVDLVIPTNNKGRKALTLIYWLLARQVLRERG 190          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_PYRIL (30S ribosomal protein S2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps2p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 71/179 (39.66%), Postives = 108/179 (60.34%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++  L+A V LGT+  +  +E   +++  R DG+ I ++ K  E+L++AA+ I   + P  I+V + RPYG + V  F K+    A+ GR  PGT TN    ++ E  LL + DP+ D Q + EAA    P IA  DTD+P +Y+D  IP NNKG+ S+  +FW+LAR VL+ RG ++P
Sbjct:   13 LEKYLSAGVRLGTRLSNKYLEERGFIYAVRPDGLRIFDIKKIDERLRIAAKFISRYQ-PDRILVHTTRPYGFKPVQMFCKFVGCRALTGRFIPGTLTNPYLPNYTEIDLLFVVDPKLDAQAVAEAAKMGIPIIALVDTDTPHQYIDFMIPCNNKGRRSLALIFWILARQVLRERGELKP 190          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_THENV (30S ribosomal protein S2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps2p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 68/179 (37.99%), Postives = 107/179 (59.78%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++  L+A V LGT+  +  +E   ++F  R DG+ I ++ K  E+L++AA+ I     P  ++V + RPYG + V  F K+    A+ GR  PGT TN     + E  LL + DP+ D Q + EAA    P +A  DTD+P +Y+D+ +P NNKG+ S+  +FW+LAR +L+ RG ++P
Sbjct:   12 LEKYLSAGVRLGTRLSNRYLEERGFIFAVRPDGLRIFDIKKIDERLKIAAKFIARYP-PDRVLVHTTRPYGFKPVQMFCKFVGCRALTGRFIPGTLTNPNLPHYQEVDLLFVVDPKLDAQAVTEAAKMGIPVVALVDTDTPHQYIDLMVPCNNKGRKSLALIFWILARQILRERGELKP 189          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_CALMQ (30S ribosomal protein S2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps2p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 73/189 (38.62%), Postives = 109/189 (57.67%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTK--NCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            P Q  +    ++  +AA V LG +  N   Q   ++F  R DG+ I NL +  E++++AAR+I     P  ++V S +PY  + +  F K+     + GR  PGT TN   T   +  LL++ DP+TD Q I EA+L   P IA  DTDS   ++D+ IP NNKG++S+  +FWLLAR VL+ RG ++P
Sbjct:    8 PEQGEEYLVPVERYMAAAVRLGARVSNNYLQERGFIFSVRPDGLRIFNLKRIDERIRIAARMITRYP-PSRVMVHSTKPYAFKPIQMFCKFVGCLPVTGRLIPGTLTNPYLTHHIDIDLLMVADPKTDFQAINEASLTGIPVIALVDTDSDPTFIDLMIPCNNKGRNSLALVFWLLARQVLRERGELKP 195          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_PYRAE (30S ribosomal protein S2P OS=Pyrobaculum aerophilum GN=rps2p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 72/179 (40.22%), Postives = 107/179 (59.78%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMER--YVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            ++  L+A V LGT+  +  +E   ++F  R DG+ I ++ K  E+L++AA+ I A   P  ++V + RPYG + V  F K+    A+ GR  PGT TN     + E  LL + DP+ D Q + EAA    P IA  DTD+P +Y+D  IP NNKG+ S+  +FW+LAR VL+ RG ++P
Sbjct:   13 LEKYLSAGVRLGTRLSNKYLEDRGFIFAVRPDGLRIFDIKKIDERLKIAAKFI-ARYRPERVLVHTTRPYGFKPVQMFCKFVGCKALTGRFIPGTLTNPNLPHYQEVDLLFVVDPKLDAQAVAEAAKMGIPVIALVDTDTPHQYIDFMIPCNNKGRKSLALIFWILARQVLRERGELKP 190          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METMA (30S ribosomal protein S2P OS=Methanosarcina mazei GN=rps2p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 70/194 (36.08%), Postives = 115/194 (59.28%), Query Frame = 1
Query:   73 IKMATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 654
            + +A   A + ++ S     I   LAA VH+GT+     M R+V++ R DG+Y++++  T E++++A++++   + P  I+V S+R YGQ     F++     A+ GR  PG+ TN     F EP ++I+TDP  D Q +KEA+    P IA CDT++    VD+ IP NNKG+ ++  ++WLLAR V ++  T
Sbjct:   19 VPVADDEAASAKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PSRILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVIALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNNT 211          
The following BLAST results are available for this feature:
BLAST of DN135197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_IGNH41.171e-3342.7030S ribosomal protein S2P OS=Ignicoccus hospitalis... [more]
RS2_THEVO1.529e-3343.7130S ribosomal protein S2P OS=Thermoplasma volcaniu... [more]
RS2_METJA4.449e-3337.5030S ribosomal protein S2P OS=Methanocaldococcus ja... [more]
RS2_PYRAR4.919e-3240.7830S ribosomal protein S2P OS=Pyrobaculum arsenatic... [more]
RS2_METTP4.919e-3241.0430S ribosomal protein S2P OS=Methanosaeta thermoph... [more]
RS2_PYRIL1.869e-3139.6630S ribosomal protein S2P OS=Pyrobaculum islandicu... [more]
RS2_THENV3.188e-3137.9930S ribosomal protein S2P OS=Thermoproteus neutrop... [more]
RS2_CALMQ3.188e-3138.6230S ribosomal protein S2P OS=Caldivirga maquilinge... [more]
RS2_PYRAE4.164e-3140.2230S ribosomal protein S2P OS=Pyrobaculum aerophilu... [more]
RS2_METMA7.103e-3136.0830S ribosomal protein S2P OS=Methanosarcina mazei ... [more]

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Properties
Property NameValue
Genbank descriptionwca07g03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135197 ID=DN135197; Name=DN135197; organism=Citrus sinensis; type=EST; length=687bp
GGGGATCCAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGNGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGACACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACACTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTC
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