DN135197

Overview
NameDN135197
Unique NameDN135197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_HALS3 (30S ribosomal protein S2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.013e-30
Identity = 69/184 (37.50%), Postives = 110/184 (59.78%), Query Frame = 1
Query:  112 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651
            +S +EAD    ++  L A VH+GT+     M+R++ + R DG+Y++++ +T ++++ AA  + A  +P  I+V S+R YG+    KFA+   A A  GR  PGT TN     + EP +L++TDP  D Q +KEA     P IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   53 MSDEEADLLIPVEDYLGAGVHIGTQQKTNDMDRFIHRVRTDGLYVLDVSRTDDRVRTAADFL-ANYDPEQILVTSSRQYGRFPAEKFAEAVGARARTGRFIPGTLTNPDYDGYIEPDVLVVTDPIGDSQAVKEAITVGIPVIAMCDSNNQTGNVDLVVPTNNKGRRALSVVYWLLANETLDRRG 235          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METBU (30S ribosomal protein S2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps2p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30
Identity = 71/189 (37.57%), Postives = 109/189 (57.67%), Query Frame = 1
Query:   82 ATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 648
            A  +A A    S     I   LAA VH+GT+     M ++V++ R DG+Y++++  T E+++  A  + ++ +P  I+V SAR YGQ     F+K   A +  GR  PG+ TN +Q  F EP ++I+TDP  D Q I+EA     P +A CDT++    VD+ IP NNKG+ ++  ++WLLAR +   R
Sbjct:   12 AETSAAAENTESTSLVPIDEYLAAGVHIGTQQKTQNMMKFVYRVRTDGLYVLDIQSTDERIRSIAHFL-SMYDPSRILVVSARQYGQYPATMFSKSVGAVSKVGRFIPGSLTNPVQEGFFEPDVVIVTDPAGDAQVIREAVNVGIPVVALCDTNNMTSNVDLVIPTNNKGRKALSLVYWLLAREIANER 199          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METBF (30S ribosomal protein S2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps2p PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30
Identity = 68/189 (35.98%), Postives = 111/189 (58.73%), Query Frame = 1
Query:   88 GTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 654
            G   + ++ S     I   LAA VH+GT+     M R+V++ R DG+Y++++  T E++++AA+++   + P  I+V S+R YGQ     F++     ++ GR  PG  TN     F EP ++I+TDP  D Q +KEA+    P +A CDT++    VD+ IP NNKG+ ++  ++WLLAR V ++  T
Sbjct:   25 GEGPSVKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVAAKLLSHYD-PSRILVVSSRQYGQHPARMFSRALSTKSMLGRFIPGLLTNPQIHGFFEPDIVIVTDPAGDAQVLKEASSIGVPIVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNST 212          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METB6 (30S ribosomal protein S2P OS=Methanoregula boonei (strain 6A8) GN=rps2p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30
Identity = 63/181 (34.81%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  109 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651
            +L +    ++  LAA VH+GT+     M++++++ R DG+YI+++ +T  +++  A+ +   E P +I+V ++R YGQ    KFA    A +  GR  PG  TN +   + EP+++++TDP  D Q I EA     P +A CDT++  ++VD+ IP NNKG+ ++  +++LL R +L++RG
Sbjct:   10 ELKEPLIPVEEYLAAGVHIGTQQKSEDMKKFIYRVRGDGLYILDIRETDARIKTVAKFLTQYEAP-EILVVTSRQYGQYPAKKFADTIGAMSATGRFIPGLLTNPVLDGYIEPKVIVVTDPIGDAQVINEAVQCGIPVVALCDTNNMTKFVDLVIPTNNKGRKALSMIYFLLTREMLRIRG 189          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METMJ (30S ribosomal protein S2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 67/184 (36.41%), Postives = 110/184 (59.78%), Query Frame = 1
Query:  109 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFN---EPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651
            +L +    ++  LAA VH+GT+     M +++++ R DG+YI+++  T E+++ AA+ +   E P  I+V ++R YGQ    KFA      A+ GR  PG  TNQ     N   EP ++++TDP  D Q I EA     P +A CDT++  +YVD+ IP NNKG+ ++  +++LL + +L++RG
Sbjct:    9 ELKEPLLPVEEYLAAGVHIGTQQKSKDMMKFIYRVRGDGLYILDIQATDERIKTAAKFLSQYE-PSKILVVTSRQYGQYPAKKFADAIGGMAVVGRFIPGMLTNQRLHGLNKYIEPDVVVVTDPIGDSQTIAEAVQVGIPIVALCDTNNMTKYVDVVIPTNNKGRKALSVIYYLLTKELLRLRG 191          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METHJ (30S ribosomal protein S2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps2p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 62/181 (34.25%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  109 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651
            +L++    ++  LAA VH+GT+     M+ ++++ R DG+YI+++ +T E++++AA+ +   + P  I+V ++R YGQ    +FA    A  I GR+ PGT TN +   + EP ++++TDP +D Q I+EA   + P +A CDT++    VD+ +P NNKG+ ++  +++LL +  L+ +G
Sbjct:    9 ELNEPLVSVEEYLAAGVHIGTQQKSSDMKNFIYRVRGDGLYILDIRETDERIKLAAKFLSQYD-PAKILVVTSRQYGQYPARRFADSIGATPIIGRYIPGTLTNPLLPRYAEPDVVVVTDPVSDLQVIREAIQVSIPVVALCDTNNMTSLVDVVVPTNNKGRKALSMIYFLLTKEFLRHKG 188          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METAC (30S ribosomal protein S2P OS=Methanosarcina acetivorans GN=rps2p PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 66/174 (37.93%), Postives = 107/174 (61.49%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 654
            I   LAA VH+GT+     M R+V++ R DG+Y++++  T E++++A++++   + P  I+V S+R YGQ     F++     A+ GR  PG+ TN     F EP ++I+TDP  D Q +KEA+    P +A CDT++    VD+ IP NNKG+ ++  ++WLLAR V ++  T
Sbjct:   40 IDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PARILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNDT 212          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_HALWD (30S ribosomal protein S2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps2p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29
Identity = 67/184 (36.41%), Postives = 108/184 (58.70%), Query Frame = 1
Query:  112 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651
            +  +EAD    ++  L+A VH+GT+     MER++ + R+DG+Y++++ +T  +++ AA  + A  NP  ++V S+R YG+    KFA    A A  GR  PGT TN     + EP ++++TDP  D Q +KEA     P IA CD+++     D+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   83 MPDEEADLLIPVEDYLSAGVHIGTQQKTSDMERFIHRVRDDGLYVLDVSQTDSRIRTAANFL-ANYNPDQMLVTSSRQYGRFPAKKFADAVGARARTGRFIPGTLTNPDYAGYIEPDVVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNQTSNTDLVVPTNNKGRRALSVVYWLLANETLDRRG 265          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_UNCMA (30S ribosomal protein S2P OS=Uncultured methanogenic archaeon RC-I GN=rps2p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 63/168 (37.50%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  145 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 648
            LAA VH+GT+     M++++++ R+DG+Y++++  T E+++ AA+ +   + P +++V  AR YGQ     FA+   A  I GR  PGT TN +   F EP ++++TDP  D Q + EA     P +A CDT++    +D+ IP NNKG+ ++  ++WLLAR V + R
Sbjct:   25 LAAGVHIGTQQKTEDMKKFIYRVRSDGLYVLDVQSTDERIRAAAKFLSRYD-PANVLVVCARQYGQHPAEMFARAIGARHIVGRFIPGTLTNPVYMFFAEPDVVVVTDPIGDAQAVTEAISIGVPVVAMCDTNNMTSNIDLVIPTNNKGRKALALVYWLLAREVSRER 191          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METLZ (30S ribosomal protein S2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps2p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 67/183 (36.61%), Postives = 108/183 (59.02%), Query Frame = 1
Query:  109 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            +L++    ++  LAA VH+GT+  D  M+ ++++ R+DG+YII++ KT E+++  A+ +   E P  I V ++R YGQ    KFA    A +  GR  PGT TN     + EP ++I+TDP  D Q I EA     P IA CD ++    VD+ IP NNKG+ ++  +++LL +  L+ +G +
Sbjct:    9 ELNEPLVSVEEYLAAGVHIGTQQKDNDMKDFIYRVRSDGLYIIDIRKTDERIKQVAKFLARYE-PAKIFVVTSRQYGQYPAQKFADTIGALSHVGRFIPGTLTNPKLPKYVEPSVVIVTDPIGDAQVITEAVQCGMPVIALCDINNRTNNVDLVIPTNNKGRKALSMVYFLLTKEFLRQKGIV 190          
The following BLAST results are available for this feature:
BLAST of DN135197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_HALS36.013e-3037.5030S ribosomal protein S2P OS=Halobacterium salinar... [more]
RS2_METBU7.853e-3037.5730S ribosomal protein S2P OS=Methanococcoides burt... [more]
RS2_METBF7.853e-3035.9830S ribosomal protein S2P OS=Methanosarcina barker... [more]
RS2_METB67.853e-3034.8130S ribosomal protein S2P OS=Methanoregula boonei ... [more]
RS2_METMJ1.026e-2936.4130S ribosomal protein S2P OS=Methanoculleus marisn... [more]
RS2_METHJ1.026e-2934.2530S ribosomal protein S2P OS=Methanospirillum hung... [more]
RS2_METAC1.026e-2937.9330S ribosomal protein S2P OS=Methanosarcina acetiv... [more]
RS2_HALWD1.340e-2936.4130S ribosomal protein S2P OS=Haloquadratum walsbyi... [more]
RS2_UNCMA2.984e-2937.5030S ribosomal protein S2P OS=Uncultured methanogen... [more]
RS2_METLZ5.090e-2936.6130S ribosomal protein S2P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionwca07g03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135197 ID=DN135197; Name=DN135197; organism=Citrus sinensis; type=EST; length=687bp
GGGGATCCAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGNGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGACACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACACTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTC
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