DN135197
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_HALS3 (30S ribosomal protein S2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps2p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.013e-30 Identity = 69/184 (37.50%), Postives = 110/184 (59.78%), Query Frame = 1 Query: 112 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651 +S +EAD ++ L A VH+GT+ M+R++ + R DG+Y++++ +T ++++ AA + A +P I+V S+R YG+ KFA+ A A GR PGT TN + EP +L++TDP D Q +KEA P IA CD+++ VD+ +P NNKG+ ++ ++WLLA L RG Sbjct: 53 MSDEEADLLIPVEDYLGAGVHIGTQQKTNDMDRFIHRVRTDGLYVLDVSRTDDRVRTAADFL-ANYDPEQILVTSSRQYGRFPAEKFAEAVGARARTGRFIPGTLTNPDYDGYIEPDVLVVTDPIGDSQAVKEAITVGIPVIAMCDSNNQTGNVDLVVPTNNKGRRALSVVYWLLANETLDRRG 235
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METBU (30S ribosomal protein S2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps2p PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30 Identity = 71/189 (37.57%), Postives = 109/189 (57.67%), Query Frame = 1 Query: 82 ATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 648 A +A A S I LAA VH+GT+ M ++V++ R DG+Y++++ T E+++ A + ++ +P I+V SAR YGQ F+K A + GR PG+ TN +Q F EP ++I+TDP D Q I+EA P +A CDT++ VD+ IP NNKG+ ++ ++WLLAR + R Sbjct: 12 AETSAAAENTESTSLVPIDEYLAAGVHIGTQQKTQNMMKFVYRVRTDGLYVLDIQSTDERIRSIAHFL-SMYDPSRILVVSARQYGQYPATMFSKSVGAVSKVGRFIPGSLTNPVQEGFFEPDVVIVTDPAGDAQVIREAVNVGIPVVALCDTNNMTSNVDLVIPTNNKGRKALSLVYWLLAREIANER 199
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METBF (30S ribosomal protein S2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps2p PE=3 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30 Identity = 68/189 (35.98%), Postives = 111/189 (58.73%), Query Frame = 1 Query: 88 GTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 654 G + ++ S I LAA VH+GT+ M R+V++ R DG+Y++++ T E++++AA+++ + P I+V S+R YGQ F++ ++ GR PG TN F EP ++I+TDP D Q +KEA+ P +A CDT++ VD+ IP NNKG+ ++ ++WLLAR V ++ T Sbjct: 25 GEGPSVKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVAAKLLSHYD-PSRILVVSSRQYGQHPARMFSRALSTKSMLGRFIPGLLTNPQIHGFFEPDIVIVTDPAGDAQVLKEASSIGVPIVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNST 212
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METB6 (30S ribosomal protein S2P OS=Methanoregula boonei (strain 6A8) GN=rps2p PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30 Identity = 63/181 (34.81%), Postives = 112/181 (61.88%), Query Frame = 1 Query: 109 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651 +L + ++ LAA VH+GT+ M++++++ R DG+YI+++ +T +++ A+ + E P +I+V ++R YGQ KFA A + GR PG TN + + EP+++++TDP D Q I EA P +A CDT++ ++VD+ IP NNKG+ ++ +++LL R +L++RG Sbjct: 10 ELKEPLIPVEEYLAAGVHIGTQQKSEDMKKFIYRVRGDGLYILDIRETDARIKTVAKFLTQYEAP-EILVVTSRQYGQYPAKKFADTIGAMSATGRFIPGLLTNPVLDGYIEPKVIVVTDPIGDAQVINEAVQCGIPVVALCDTNNMTKFVDLVIPTNNKGRKALSMIYFLLTREMLRIRG 189
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METMJ (30S ribosomal protein S2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps2p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29 Identity = 67/184 (36.41%), Postives = 110/184 (59.78%), Query Frame = 1 Query: 109 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFN---EPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651 +L + ++ LAA VH+GT+ M +++++ R DG+YI+++ T E+++ AA+ + E P I+V ++R YGQ KFA A+ GR PG TNQ N EP ++++TDP D Q I EA P +A CDT++ +YVD+ IP NNKG+ ++ +++LL + +L++RG Sbjct: 9 ELKEPLLPVEEYLAAGVHIGTQQKSKDMMKFIYRVRGDGLYILDIQATDERIKTAAKFLSQYE-PSKILVVTSRQYGQYPAKKFADAIGGMAVVGRFIPGMLTNQRLHGLNKYIEPDVVVVTDPIGDSQTIAEAVQVGIPIVALCDTNNMTKYVDVVIPTNNKGRKALSVIYYLLTKELLRLRG 191
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METHJ (30S ribosomal protein S2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps2p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29 Identity = 62/181 (34.25%), Postives = 114/181 (62.98%), Query Frame = 1 Query: 109 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651 +L++ ++ LAA VH+GT+ M+ ++++ R DG+YI+++ +T E++++AA+ + + P I+V ++R YGQ +FA A I GR+ PGT TN + + EP ++++TDP +D Q I+EA + P +A CDT++ VD+ +P NNKG+ ++ +++LL + L+ +G Sbjct: 9 ELNEPLVSVEEYLAAGVHIGTQQKSSDMKNFIYRVRGDGLYILDIRETDERIKLAAKFLSQYD-PAKILVVTSRQYGQYPARRFADSIGATPIIGRYIPGTLTNPLLPRYAEPDVVVVTDPVSDLQVIREAIQVSIPVVALCDTNNMTSLVDVVVPTNNKGRKALSMIYFLLTKEFLRHKG 188
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METAC (30S ribosomal protein S2P OS=Methanosarcina acetivorans GN=rps2p PE=3 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29 Identity = 66/174 (37.93%), Postives = 107/174 (61.49%), Query Frame = 1 Query: 133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 654 I LAA VH+GT+ M R+V++ R DG+Y++++ T E++++A++++ + P I+V S+R YGQ F++ A+ GR PG+ TN F EP ++I+TDP D Q +KEA+ P +A CDT++ VD+ IP NNKG+ ++ ++WLLAR V ++ T Sbjct: 40 IDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PARILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNDT 212
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_HALWD (30S ribosomal protein S2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps2p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29 Identity = 67/184 (36.41%), Postives = 108/184 (58.70%), Query Frame = 1 Query: 112 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651 + +EAD ++ L+A VH+GT+ MER++ + R+DG+Y++++ +T +++ AA + A NP ++V S+R YG+ KFA A A GR PGT TN + EP ++++TDP D Q +KEA P IA CD+++ D+ +P NNKG+ ++ ++WLLA L RG Sbjct: 83 MPDEEADLLIPVEDYLSAGVHIGTQQKTSDMERFIHRVRDDGLYVLDVSQTDSRIRTAANFL-ANYNPDQMLVTSSRQYGRFPAKKFADAVGARARTGRFIPGTLTNPDYAGYIEPDVVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNQTSNTDLVVPTNNKGRRALSVVYWLLANETLDRRG 265
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_UNCMA (30S ribosomal protein S2P OS=Uncultured methanogenic archaeon RC-I GN=rps2p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29 Identity = 63/168 (37.50%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 145 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 648 LAA VH+GT+ M++++++ R+DG+Y++++ T E+++ AA+ + + P +++V AR YGQ FA+ A I GR PGT TN + F EP ++++TDP D Q + EA P +A CDT++ +D+ IP NNKG+ ++ ++WLLAR V + R Sbjct: 25 LAAGVHIGTQQKTEDMKKFIYRVRSDGLYVLDVQSTDERIRAAAKFLSRYD-PANVLVVCARQYGQHPAEMFARAIGARHIVGRFIPGTLTNPVYMFFAEPDVVVVTDPIGDAQAVTEAISIGVPVVAMCDTNNMTSNIDLVIPTNNKGRKALALVYWLLAREVSRER 191
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_METLZ (30S ribosomal protein S2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps2p PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29 Identity = 67/183 (36.61%), Postives = 108/183 (59.02%), Query Frame = 1 Query: 109 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657 +L++ ++ LAA VH+GT+ D M+ ++++ R+DG+YII++ KT E+++ A+ + E P I V ++R YGQ KFA A + GR PGT TN + EP ++I+TDP D Q I EA P IA CD ++ VD+ IP NNKG+ ++ +++LL + L+ +G + Sbjct: 9 ELNEPLVSVEEYLAAGVHIGTQQKDNDMKDFIYRVRSDGLYIIDIRKTDERIKQVAKFLARYE-PAKIFVVTSRQYGQYPAQKFADTIGALSHVGRFIPGTLTNPKLPKYVEPSVVIVTDPIGDAQVITEAVQCGMPVIALCDINNRTNNVDLVIPTNNKGRKALSMVYFLLTKEFLRQKGIV 190 The following BLAST results are available for this feature:
BLAST of DN135197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >DN135197 ID=DN135197; Name=DN135197; organism=Citrus sinensis; type=EST; length=687bpback to top |