DN135197

Overview
NameDN135197
Unique NameDN135197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_META3 (30S ribosomal protein S2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps2p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 64/171 (37.43%), Postives = 102/171 (59.65%), Query Frame = 1
Query:  145 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            LA+ +H+GT+     M+R++++ R DG+Y++++ KT E++ +AA+ +   E P +I+  S R Y    + KF + T     AGR  PGT TN     F EP +L L+DPR D Q +KEA     P +  CDT+    ++D  IP NNKG+ S+  +++L+AR  ++ RG I
Sbjct:   14 LASGIHIGTQQKTEDMKRFIYRVRADGLYVLDVRKTDERIGLAAKFLSKYE-PEEILAVSRRIYSVGPLKKFGQTTGITTAAGRFVPGTLTNPSSRKFLEPEVLFLSDPRIDRQALKEAIEIGIPIVGMCDTEHLTSFIDFIIPTNNKGRKSVSLVYYLIAREYMKNRGLI 183          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_NATPD (30S ribosomal protein S2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps2p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 64/173 (36.99%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651
            ++  LAA VH+GT+     M+R++ + R DG+Y++++ +T ++++ AA  +   + P  I+V S+R YG+    KFA    A A  GR  PGT TN     + EP ++++TDP  D Q +KEA     P IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   92 VEDYLAAGVHIGTQQKTKSMDRFIHRVRTDGLYVLDVSQTDQRIRTAASFLSNYQ-PEQILVASSRQYGRFPAEKFADAVGARARTGRFIPGTLTNPDYDGYIEPDVVVVTDPIGDSQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVIYWLLANETLDRRG 263          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_HALMA (30S ribosomal protein S2P OS=Haloarcula marismortui GN=rps2p PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 68/182 (37.36%), Postives = 104/182 (57.14%), Query Frame = 1
Query:  118 QKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 651
            Q EAD    ++  L A VH+GT+     MER++ + R DG+Y++++  T E+++ AA  +   E P  I+  S+R YG+    KFA+   A    GR  PGT TN     + EP ++++TDP  D Q +KEA     P IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   73 QSEADLLIPVEDYLGAGVHIGTQQKTQDMERFIHRVRTDGLYVLDVSMTDERIRTAADFLSNYE-PEQILAASSRQYGRFPAEKFAEAIGARVRTGRFIPGTLTNPDYDGYIEPDIVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVVYWLLANETLDRRG 253          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_AERPE (30S ribosomal protein S2P OS=Aeropyrum pernix GN=rps2p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.526e-28
Identity = 67/177 (37.85%), Postives = 101/177 (57.06%), Query Frame = 1
Query:  151 AEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDV 681
            A V  GT+ C   M ++V +   +G Y ++  K  E+L MAA+ +   E P  I V S R YGQ+ V    +     AI GR  PGTFTN     + EP ++++TDPR D Q + EA+    P +A  DTD+ +  +D+ IPANN+G+ S+  ++W+L R +L+ RG ++P    DV
Sbjct:   18 AGVIYGTQICTRYMRQFVHRILPEGYYQLDYLKIDERLAMAAKFLSTFE-PEKIAVVSVRIYGQKPVRMMCERVGCKAITGRIIPGTFTNPNLEHYVEPDVVVVTDPRMDRQAVVEASKVGIPVVALVDTDNSIENIDLVIPANNRGRRSLALIYWILTREILRRRGVLKPDEDLDV 193          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_KORCO (30S ribosomal protein S2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps2p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 67/176 (38.07%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  136 QMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 663
            Q  L + VH+GT      ME+++++ R DG+ II++ K  E+++ A + +   + P  ++  SAR YG + V KFA+YT A  I GR  PGT TN       EP +++L+DPR D Q   E+     P +A  D D+ +  +D+ IP NNKG+ S+  ++WLL R VL+ R  I P
Sbjct:   24 QKYLLSGVHVGTGIRTKDMEKFIYRVRPDGLCIIDIRKIDERIRTAGKFLARFD-PDRVLAVSARIYGFKPVRKFAEYTGAMYITGRILPGTLTNPQAPLHLEPDVVLLSDPRVDRQIHIESVRMGIPVVALVDADNMLENIDLAIPVNNKGRRSLALVYWLLTREVLRNRKVIPP 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_ENCCU (40S ribosomal protein S0 OS=Encephalitozoon cuniculi GN=RPS0 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.351e-28
Identity = 65/173 (37.57%), Postives = 104/173 (60.12%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRR-NDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 648
            +++++ ++ HLG  + +    RY++  R  D I II++  TWEKL +AAR    I++P  I V S + +G++ V+KF +   A  I GR  PG+FTN       +PR+LI++D   D Q I E+   N PTIAF +TD+ +  VDI IP NN+   +I   F++L+R++  M+
Sbjct:   19 VKLLIVSQSHLGGTSTNKSFARYLYGTRPRDRINIIDINATWEKLIIAARAFCGIKHPSSIAVVSTKTFGRKPVVKFCEAVGATPITGRFIPGSFTNSEVKRVYDPRVLIVSDTYADKQAILESQYCNLPTIAFVNTDNSLVGVDIAIPMNNRSPSAIAAGFFILSRLINYMK 191          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_NANEQ (30S ribosomal protein S2P OS=Nanoarchaeum equitans GN=rps2p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.765e-27
Identity = 61/175 (34.86%), Postives = 100/175 (57.14%), Query Frame = 1
Query:  133 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            I + + A +H+GT++    M+ YV K R DG+ I ++ K  E+L++A++++   E P +I+V   R      + KF++ T   A  GR+ PGT TN     + EP ++++TDP  D   + +A       +A CDT+    Y+D  IPANN+G  S+  ++W+LAR  L+ RG I
Sbjct:    7 INVYVKAGIHIGTRHLTKDMKPYVSKIREDGLAIFDIRKIDERLRLASKMLSYYE-PNEILVVGRRETAITPIKKFSEITKVKAFPGRYPPGTLTNPQLKYYMEPEVILITDPIMDKNALHDAYESGITILALCDTNHTKNYIDFCIPANNRGSKSLALIYWILAREYLRNRGVI 180          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_NITMS (30S ribosomal protein S2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 56/175 (32.00%), Postives = 101/175 (57.71%), Query Frame = 1
Query:  142 MLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI--VAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIR 660
            +L+  + +GT+     M  ++ K   +G+Y+++L  T +K++ AA+ I  + +EN   +IV S R Y +  + KF +   +  + GR  PGT TN     + EP+L++++DP+ D Q I EA     P I   +TD+    +D+ IPANN+G+ ++  ++WLL R +L  +G ++
Sbjct:   14 ILSTGIRVGTQVKTKFMRPFITKASPEGLYMLDLDITLDKIKTAAKFINRLGVEN---LIVCSGRQYAETPIEKFCETLGSKKLLGRFMPGTLTNPSLPYYIEPKLVLISDPQVDEQAITEATNAGIPVIGIANTDNITSNLDVIIPANNRGRKALATVYWLLVRQILIEKGELK 185          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RS2_CENSY (30S ribosomal protein S2P OS=Cenarchaeum symbiosum GN=rps2p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 55/175 (31.43%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  139 MMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPG--DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 657
            ++  + + +GT+     M++++      G Y ++L  T  +++ AA+ I   E+ G  ++IV S +   +  + KFA+      I  R  PGT TN     + EP+LL++ DP+ D Q + EA     P I   ++D+    +D+ IPANN+G+ ++  +FWLLAR VL +RG +
Sbjct:   15 LITTSGISIGTQVKTKFMKQFISDTDPTGTYTLDLEATQGRIKAAAQFI---EHTGASELIVCSGKDSARVPIRKFAELVGCKDIHKRFMPGTLTNPDLPKYMEPKLLLVCDPQVDAQAVTEATNAGIPVIGIANSDNVTSRLDVIIPANNRGRGALAAIFWLLAREVLVIRGEV 186          
The following BLAST results are available for this feature:
BLAST of DN135197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_META35.090e-2937.4330S ribosomal protein S2P OS=Methanococcus aeolicu... [more]
RS2_NATPD6.648e-2936.9930S ribosomal protein S2P OS=Natronomonas pharaoni... [more]
RS2_HALMA8.683e-2937.3630S ribosomal protein S2P OS=Haloarcula marismortu... [more]
RS2_AERPE2.526e-2837.8530S ribosomal protein S2P OS=Aeropyrum pernix GN=r... [more]
RS2_KORCO3.300e-2838.0730S ribosomal protein S2P OS=Korarchaeum cryptofil... [more]
RSSA_ENCCU7.351e-2837.5740S ribosomal protein S0 OS=Encephalitozoon cunicu... [more]
RS2_NANEQ4.765e-2734.8630S ribosomal protein S2P OS=Nanoarchaeum equitans... [more]
RS2_NITMS7.120e-2332.0030S ribosomal protein S2P OS=Nitrosopumilus mariti... [more]
RS2_CENSY3.657e-1931.4330S ribosomal protein S2P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionwca07g03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135197 ID=DN135197; Name=DN135197; organism=Citrus sinensis; type=EST; length=687bp
GGGGATCCAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGNGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGACACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACACTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTC
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