DN135197

Overview
NameDN135197
Unique NameDN135197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig423 contig Csv1_Contig423:3..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_DROMO (40S ribosomal protein SA OS=Drosophila mojavensis GN=sta PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.261e-68
Identity = 127/192 (66.15%), Postives = 149/192 (77.60%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            LS KE DI  ML A  HLG++N +FQME+YVFKRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  N P IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+V
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVFKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRTTEWPVVV 199          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_DROGR (40S ribosomal protein SA OS=Drosophila grimshawi GN=sta PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.261e-68
Identity = 127/192 (66.15%), Postives = 149/192 (77.60%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            LS KE DI  ML A  HLG++N +FQME+YVFKRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  N P IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+V
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVFKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRTTEWPVVV 199          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_SPAAU (40S ribosomal protein SA OS=Sparus aurata GN=rpsa PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.260e-68
Identity = 124/191 (64.92%), Postives = 147/191 (76.96%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 684
            L  KE D+   LAA  HLG  N DFQM++YV+KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  N PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMDQYVYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWEVM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_CRIGR (40S ribosomal protein SA OS=Cricetulus griseus GN=Rpsa PE=1 SV=3)

HSP 1 Score: 257.684 bits (657), Expect = 4.260e-68
Identity = 124/191 (64.92%), Postives = 148/191 (77.49%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 684
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR V +MRGTI   H W+VM
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISREHPWEVM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_DROWI (40S ribosomal protein SA OS=Drosophila willistoni GN=sta PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.266e-68
Identity = 126/192 (65.62%), Postives = 149/192 (77.60%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  N P IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+V
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRSIEWPVVV 199          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_SALSA (40S ribosomal protein SA OS=Salmo salar GN=rpsa PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.619e-67
Identity = 123/191 (64.40%), Postives = 145/191 (75.92%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 684
            L  KE D+   LAA  HLG  N DFQME Y +KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  N PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+L+R VL+MRGTI   H W+VM
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNMDFQMEHYTYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIAMCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLSREVLRMRGTISREHPWEVM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_POSPM (40S ribosomal protein S0 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.114e-67
Identity = 122/196 (62.24%), Postives = 154/196 (78.57%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMV 687
            P  LS  + +IQ++LAA+ H+G+KNCD QM  YV+KRR DGI+I+N+GKTWEKL  AAR+I AIENP D+ V SARPYG RAVLK+A  T A AIAGR TPG+FTN +  SF EPRL+++TDPR DHQ I+EA+  N P IAFCDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMV
Sbjct:    6 PSVLSATDEEIQLLLAAQAHIGSKNCDKQMLPYVWKRRADGIHILNIGKTWEKLVFAARIIAAIENPNDVCVISARPYGHRAVLKYAANTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRVDHQAIREASYVNIPVIAFCDTDAPLKFVDVAIPTNNKSRHSIGLMWWLLAREVLRLRGTIPRTTDGWNVMV 201          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_TRIGR (40S ribosomal protein SA OS=Tripneustes gratilla PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.033e-67
Identity = 118/191 (61.78%), Postives = 150/191 (78.53%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVM 684
            L+ KE D+Q  LA+  H+G+ N D+QM +YV+KR+ DG YIINL +TWEKL MAAR+IVAIENP D+ V S+RPYGQRAVLKF  +T A  IAGR+TPGTFTNQ+Q +F EPR+LI+TDPR+DHQP+ EA+  N P IA C+TDSP+RYVDI IP NNK  HSIG ++W+L+R VL++RG I     W++M
Sbjct:    8 LALKEDDVQKFLASGAHIGSSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVAIENPADVCVISSRPYGQRAVLKFGAHTGATPIAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNTDSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIM 198          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_CRYNE (40S ribosomal protein S0 OS=Cryptococcus neoformans GN=RPS0 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.337e-66
Identity = 121/198 (61.11%), Postives = 151/198 (76.26%), Query Frame = 1
Query:  103 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG----HKWDVM 684
            P+ L   E DIQ++LAA+ HLGTKNCD  ME YV+KRR DGI++IN+GKTWEKL +AARV+  IENP D+ V SARPYG RAVLK+  +T A AIAGR TPG+FTN +  SF EPR++I+TDPR DHQ I+EAA  N P IAFCDTD+  ++VDI IPANNK +HSIG +++LL R VL++RGT+  G      WDV+
Sbjct:    7 PKALQATEDDIQLLLAAQCHLGTKNCDKSMENYVWKRRADGIHVINVGKTWEKLVLAARVLATIENPNDVCVISARPYGHRAVLKYGSFTGAQAIAGRFTPGSFTNYITRSFKEPRVIIVTDPRVDHQAIREAAYVNIPVIAFCDTDASTKFVDIAIPANNKSRHSIGLMWYLLCREVLRLRGTVPRGPTGPSGWDVL 204          
BLAST of DN135197 vs. ExPASy Swiss-Prot
Match: RSSA_URECA (40S ribosomal protein SA OS=Urechis caupo PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.053e-66
Identity = 123/192 (64.06%), Postives = 146/192 (76.04%), Query Frame = 1
Query:  112 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNTPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMV 687
            L+ KE D+   LA   HLG  N DFQME+YV+KRR DG  IIN+ KTWEK+ +AAR I AIENP DI V SARPYGQRAVLKFA YT A  IAGR TPGTFTNQ+QT+F EPRLL++TDP TDHQP+ EA+  N P IA  +TDSP++YVDI IP NNK  HS+G ++W+LAR VL++RGTI     W+VMV
Sbjct:    8 LALKEEDVTKFLACASHLGANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAAIENPADICVISARPYGQRAVLKFAHYTGATPIAGRFTPGTFTNQIQTAFREPRLLVVTDPYTDHQPVTEASYVNIPVIALTNTDSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRLRGTISREVPWEVMV 199          
The following BLAST results are available for this feature:
BLAST of DN135197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_DROMO3.261e-6866.1540S ribosomal protein SA OS=Drosophila mojavensis ... [more]
RSSA_DROGR3.261e-6866.1540S ribosomal protein SA OS=Drosophila grimshawi G... [more]
RSSA_SPAAU4.260e-6864.9240S ribosomal protein SA OS=Sparus aurata GN=rpsa ... [more]
RSSA_CRIGR4.260e-6864.9240S ribosomal protein SA OS=Cricetulus griseus GN=... [more]
RSSA_DROWI7.266e-6865.6340S ribosomal protein SA OS=Drosophila willistoni ... [more]
RSSA_SALSA1.619e-6764.4040S ribosomal protein SA OS=Salmo salar GN=rpsa PE... [more]
RSSA_POSPM2.114e-6762.2440S ribosomal protein S0 OS=Postia placenta (strai... [more]
RSSA_TRIGR8.033e-6761.7840S ribosomal protein SA OS=Tripneustes gratilla P... [more]
RSSA_CRYNE2.337e-6661.1140S ribosomal protein S0 OS=Cryptococcus neoforman... [more]
RSSA_URECA3.053e-6664.0640S ribosomal protein SA OS=Urechis caupo PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionwca07g03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07g03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135197 ID=DN135197; Name=DN135197; organism=Citrus sinensis; type=EST; length=687bp
GGGGATCCAGCCAGCGAGCAGAAGTCTCCGTCGGTACCACGNGTCTCAGC
TTTCTCTCGCAGGTTTTGAGAAATAAAGATGGCGACCGGAACAGCAACGG
CCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCC
GCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTA
CGTGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGA
CTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAAC
CCTGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGT
GTTGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGACACA
CTCCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGA
CTTCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGC
TGCTCTTGGAAACACTCCCACCATTGCCTTTTGTGACACTGACTCACCTA
TGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGC
ATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGG
CACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTC
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