DN135187

Overview
NameDN135187
Unique NameDN135187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 64/148 (43.24%), Postives = 94/148 (63.51%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 504
            S  A +R+ ++ + +Q DPPA  SA PV D++  W A I+GP+D+PF  G F + + F   YP KPP+V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 63/148 (42.57%), Postives = 94/148 (63.51%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 504
            S  A +R+ ++ + +Q+DPP+  SA P+ D++  W A I+GPSD+PF  G F + + F   YP KPP+V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P   E A++YK  R+ Y     ET   SW
Sbjct:    2 STPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSW 149          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.728e-32
Identity = 64/148 (43.24%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 504
            S  A +R+ ++ + +Q DPPA  SA PV D++  W A I+GP+D+PF  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK +R +Y     ET  +SW
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE-----TTARSWT 507
            S  A +R+ ++ + +Q+DPP   SA PVAD++  W A I+GP+++PF  G F + + F   YP KPP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  R +YE     T   SWT
Sbjct:    2 STTARRRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.276e-31
Identity = 62/150 (41.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 510
            S  A +R+ ++ + +Q+D P+  SA P+ D++  W A I+GP+D+PF  G F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  R++Y     ET   SW +
Sbjct:    2 STPAKRRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.276e-31
Identity = 59/132 (44.70%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   91 KRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 486
            +R+ ++ + LQ+DPPA  S  P  D++  W+A I GP ++PF  G F +S+ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ +R +YE
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.843e-31
Identity = 67/147 (45.58%), Postives = 96/147 (65.31%), Query Frame = 1
Query:   94 RINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 522
            R+ +EL+ L K+PP          +M   +A I+G S SP+ GG+F + I  P  YPF+PPK+ F T ++HPNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+ +I+  +K +RA + + A+ WT+K+A+
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 60/137 (43.80%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 486
            S  A +R+ ++ + LQ+DPPA  S  P  +++  W A I GP  +PF  G F ++I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    2 STPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 60/137 (43.80%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 486
            S  A +R+ ++ + LQ+DPPA  S  P  +++  W A I GP  +PF  G F ++I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    2 STPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of DN135187 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.272e-31
Identity = 59/137 (43.07%), Postives = 88/137 (64.23%), Query Frame = 1
Query:   76 SQMASKRINKELEDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 486
            S  A +R+ ++ + LQ+DPP   S  P  +++  W A I GP  +PF  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
The following BLAST results are available for this feature:
BLAST of DN135187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_NECHA3.358e-3243.24Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_CANAL4.386e-3242.57Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC2_NEUCR5.728e-3243.24Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_YARLI7.482e-3242.28Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_DEBHA1.276e-3141.33Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC1_CAEEL1.276e-3144.70Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2T_XENLA2.843e-3145.58Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBE2A_MOUSE3.713e-3143.80Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN3.713e-3143.80Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBE2B_RAT8.272e-3143.07Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionwca07e06 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07e06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135187 ID=DN135187; Name=DN135187; organism=Citrus sinensis; type=EST; length=646bp
GAGACTTTTTTTTTGACTCGCAACGTAAAATAACACCAGACCCAAACTCT
CAGGCCACAAAGTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCA
ACAAGGAGTTGGAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCT
GGCCCTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCC
ATCAGACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCC
CACCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTT
TTCCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAA
GGAGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTT
GCTCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATT
GCTCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATC
CTGGACTCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTATGCCCC
TGAGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTT
TGTTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTG
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