DN135186

Overview
NameDN135186
Unique NameDN135186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10848 contig Csv1_Contig10848:121..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN135186 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 35/116 (30.17%), Postives = 60/116 (51.72%), Query Frame = 2 
Query:  203 NRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIS 550
            ++LF R + +H +LGGG  ADV+LWR K +S  ++    A W++FE   Y   T++   L+L +   F W   + + NR    +P F +   +       +  +VN+ L +  DI+
Sbjct:    6 DKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIA 121
The following BLAST results are available for this feature:
BLAST of DN135186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RTNLL_ARATH9.764e-1330.17Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionwca07e05 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07e05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135186 ID=DN135186; Name=DN135186; organism=Citrus sinensis; type=EST; length=635bp
GGGGACGGACACAACTCCAATCATCTACTCAACAGACCCCATTTTTTTCC
TTTTTTCTTGAAAGATTGGAAGAATGCCAGAGAAAATAACAGCAGAGAAC
ATTTTGGACAACCTTGTGGAAACCATTTCAGATAAGGTTCAAAAGCAGAA
AGCTGTATCATTTTTTGAGGAGGAGACATCAAGCTCAGTCACTGCTCGTT
TCAATCGGCTGTTCGGACGCCAGAAACCTGTCCACCATCTTTTGGGCGGT
GGAAAATCTGCTGATGTTTTGTTATGGAGGAACAAGAAGATATCAGCCAG
TGTATTAATGGGTGCAACAGCAATTTGGGTGCTCTTTGAATGGCTTAACT
ACCATTTTCTGACCATTGTATGCTTTGCTTTGGTCCTTGGCATGCTTGCA
CAATTTTTTTGGGTAAACATTTCGGGCTTATTTAACAGATCACCATCAAA
AGTTCCCCGCTTTGTTCTGCCTCCAGAGGTATTTGCTAACATTGGCACGA
CAGTTTGTGCTAATGTTAACGAAGCTCTGGGGCTACTTCAGGACATTTCA
TGTGGAGGAAAACTGAAACAACTTCTTGTGGCTGTAGCAGGCTTGTGGGC
TGCTGCTGTGATAGGGAGCTGTTGTAACTTTTTGA
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