DN135180

Overview
NameDN135180
Unique NameDN135180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:1..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.129e-46
Identity = 94/188 (50.00%), Postives = 122/188 (64.89%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N +I   HF K WQ  V TWFN P                I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI       +   ++++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFG 193          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 6.970e-46
Identity = 93/188 (49.47%), Postives = 122/188 (64.89%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N +I   HF K WQ  V TWFN P                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFG 193          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.189e-45
Identity = 93/188 (49.47%), Postives = 122/188 (64.89%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N +I   HF K WQ  V TWFN P                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 182.185 bits (461), Expect = 2.028e-45
Identity = 91/188 (48.40%), Postives = 122/188 (64.89%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N ++   HF K WQ  V TWFN P                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.028e-45
Identity = 94/188 (50.00%), Postives = 121/188 (64.36%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N +I   HF K WQ  V TWFN P                I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.706e-45
Identity = 89/180 (49.44%), Postives = 118/180 (65.56%), Query Frame = 3
Query:   78 KHNNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLR 617
            K NN+IPNGHF K WQ +VKTWFN P                + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++AAG+    A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  LR
Sbjct:    3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLR 181          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.315e-44
Identity = 92/188 (48.94%), Postives = 121/188 (64.36%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N +I   HF K WQ  V TWFN P                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.351e-40
Identity = 81/178 (45.51%), Postives = 114/178 (64.04%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLR 617
            N+V+ + HF+K WQ  VKTWFN P                I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++AAG+  K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PI      ++  K T     + A+  +R
Sbjct:    5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 88/185 (47.57%), Postives = 112/185 (60.54%), Query Frame = 3
Query:   93 IPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            +PN HF K WQ YVKTWFN P                I PRP    +RP V   T++YNMK+RAGRGFTLEELKAAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PI  E    E   +T++ K+F A+  L  ER   R+ G
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE-AVEEAKPITEEAKNFNAFSTLSNERAYARYAG 190          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.253e-39
Identity = 85/181 (46.96%), Postives = 111/181 (61.33%), Query Frame = 3
Query:   81 HNNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELV--KVTQDMKSFKAYDKLR 617
            HN V+ N HF+KHWQ  V+TWFN P                +FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIG++VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T E    K T+  K F AY  L+
Sbjct:    4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLK 183          
The following BLAST results are available for this feature:
BLAST of DN135180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK3.129e-4650.0060S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_RAT6.970e-4649.4760S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE1.189e-4549.4760S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN2.028e-4548.4060S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN2.028e-4550.0060S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_SPOFR7.706e-4549.4460S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_CRIGR1.315e-4448.9460S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SCHMA3.351e-4045.5160S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_SCHPO1.273e-3947.5760S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_DICDI8.253e-3946.9660S ribosomal protein L13 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionwca07d10 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07d10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135180 ID=DN135180; Name=DN135180; organism=Citrus sinensis; type=EST; length=647bp
GGGGGGTTGGCTCTGTNNNNGTCGAGACTGAGAGAAACGGACATAGTCGT
CTGCATTTCGCTCTGTAAACAGAAATGAAGCATAACAACGTAATTCCAAA
TGGGCACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTTCAACC
TACCTGCTCGCAAAAATCGACGACGAGTCGCTCGTCAAAAGAAGGCCGTT
AAAATCTTCCCTCGCCCTACTGCTGGGCCGCTTCGTCCCGTCGTTCATGG
CCAGACTTTGAAATACAACATGAAATTAAGGGCTGGCAGAGGCTTTACTC
TTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCGACAATT
GGTGTTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCA
ATCTAATGTTCAGAGGCTCAAGACTTACAAGGCTAAGTTGGTTGTTTTCC
CAAGACGTGCTCGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAATTG
GCAACAGCAACTCAAGTACAAGGACCTTACATGCCCATTGCTCCTGAGAA
GCCTACTGTCGAGCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCAAGG
CTTATGACAAACTCCGTATCGAGCGTGTGAACGAGCGCCATTTTGGT
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