DN135180

Overview
NameDN135180
Unique NameDN135180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:1..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.033e-37
Identity = 81/188 (43.09%), Postives = 114/188 (60.64%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N ++ N HF+KHW   +KTWF+ P                I PRP AG LR VV     +YN K R GRGF+L+ELKAAGI +  A TIG++VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P++      E  +VT   +  + +  LR ER ++++ G
Sbjct:    6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRG 193          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34
Identity = 80/172 (46.51%), Postives = 105/172 (61.05%), Query Frame = 3
Query:  144 FNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            FN P                I PRP AG LRP V  QT KYN +LR GRGF+L+ELKAAGI KK A  IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P    I PEK       +T + +  K +D+LR  R ++R  G
Sbjct:    2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARA----ITDEERKVKVFDRLRQARAHKRLAG 169          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.460e-27
Identity = 74/183 (40.44%), Postives = 101/183 (55.19%), Query Frame = 3
Query:   99 NGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N HF+KHWQ  V+  F+                  I PRP    LRPVV   T+KYN K+RAGRGFTL ELKA GI  K A TIG+SVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +  +       +++    V+ P    APE   +  V+V +      AY  LR+ R  +++ G
Sbjct:   11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQP----APES-GLRAVEVPEQ----TAYRTLRLARNEKKYKG 183          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.548e-27
Identity = 79/188 (42.02%), Postives = 102/188 (54.26%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N  I   HF+KHWQ  VK  F+                  I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR     KA ++     A AT       PIA     VE   V  + +S  A+  LR+ R  ++  G
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 75/181 (41.44%), Postives = 97/181 (53.59%), Query Frame = 3
Query:  105 HFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            HF+KHWQ  VK  FN                  I PRP    LRPVV   T+KYN K+RAGRGFT  E+KAAG+    A TIG++VDHRR+N++ E  + NVQRLK Y++K++VFPR  +         + L+TA        PIA  +P VE            AY  LR+ R  +R+ G
Sbjct:   13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGKV----PETEQVLSTAAA-----FPIA--QPAVETETRAVQDNGESAYRTLRMARSEKRYKG 181          
BLAST of DN135180 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 79/188 (42.02%), Postives = 102/188 (54.26%), Query Frame = 3
Query:   84 NNVIPNGHFKKHWQNYVKTWFNLPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 647
            N  I   HF+KHWQ  VK  F+                  I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR     KA ++     A AT       PIA     VE   V  + +S  A+  LR+ R  ++  G
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181          
The following BLAST results are available for this feature:
BLAST of DN135180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CAEEL2.033e-3743.0960S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_LUMRU7.993e-3446.5160S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_CANAL1.460e-2740.4460S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13A_YEAST5.548e-2742.0260S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13_SACEX9.464e-2741.4460S ribosomal protein L13 OS=Saccharomyces exiguus... [more]
RL13B_YEAST9.464e-2742.0260S ribosomal protein L13-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionwca07d10 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07d10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135180 ID=DN135180; Name=DN135180; organism=Citrus sinensis; type=EST; length=647bp
GGGGGGTTGGCTCTGTNNNNGTCGAGACTGAGAGAAACGGACATAGTCGT
CTGCATTTCGCTCTGTAAACAGAAATGAAGCATAACAACGTAATTCCAAA
TGGGCACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTTCAACC
TACCTGCTCGCAAAAATCGACGACGAGTCGCTCGTCAAAAGAAGGCCGTT
AAAATCTTCCCTCGCCCTACTGCTGGGCCGCTTCGTCCCGTCGTTCATGG
CCAGACTTTGAAATACAACATGAAATTAAGGGCTGGCAGAGGCTTTACTC
TTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCGACAATT
GGTGTTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCA
ATCTAATGTTCAGAGGCTCAAGACTTACAAGGCTAAGTTGGTTGTTTTCC
CAAGACGTGCTCGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAATTG
GCAACAGCAACTCAAGTACAAGGACCTTACATGCCCATTGCTCCTGAGAA
GCCTACTGTCGAGCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCAAGG
CTTATGACAAACTCCGTATCGAGCGTGTGAACGAGCGCCATTTTGGT
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