DN135153

Overview
NameDN135153
Unique NameDN135153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135153_ssr38 microsatellite DN135153_ssr38:38..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5694 contig Csv1_Contig5694:1..419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.674e-26
Identity = 51/71 (71.83%), Postives = 56/71 (78.87%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            MGR+PCCEK    +G WT EEDQ L +YI  HGEG WRSLPK AGLLRCGKSCRLRWINYLR D+ RGN +
Sbjct:    1 MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNIS 71          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.069e-25
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            MGR+PCCEK    +G WT EEDQ L +YI+++GEG WRSLPK AGL RCGKSCRLRWINYLR DL RGN T
Sbjct:    1 MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNIT 71          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.062e-25
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGR PCCEK    +G WT EEDQ+L+ +I  +G  CWR++PK AGLLRCGKSCRLRW NYLRPDL RG F++
Sbjct:    1 MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSE 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.016e-24
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            MGR  CC K    KG W+ EED++L++YI  HG GCW S+PK AGL RCGKSCRLRWINYLRPDL RG F+
Sbjct:    1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFS 71          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.491e-24
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGR PCC+K    KG WT EED++LI +I  +G+ CWR++PK AGL RCGKSCRLRW NYLRPDL RG  +D
Sbjct:    1 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSD 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            MGR  CC K    +GAWT +ED  L  Y++AHGEG WR +P+ AGL RCGKSCRLRW+NYLRP++ RGN +
Sbjct:    1 MGRRACCAKEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNIS 71          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGR PCC+K    KG WT EED  L+ YI+ HG G WR++P   GLLRC KSCRLRW NYLRP + RG+FT+
Sbjct:    1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTE 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.887e-22
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  203 MGRSPCCEKAH-TNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGRSPCC++     KG W  EED +L  YI  +G G WRSLPK AGL RCGKSCRLRW+NYLRPD+ RG F+D
Sbjct:    1 MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSD 73          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.365e-22
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 2
Query:  212 SPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            +PCC K    +G WT EED+ L+ +I+  GEG WRSLPK AGLLRCGKSCRLRW+NYLRP + RG  T
Sbjct:   15 TPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.559e-21
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGC-WRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGR+PCC+KA+  +G W+ EED +L DYI   G G  W +LP  AGL RCGKSCRLRW+NYLRP++  G+FT+
Sbjct:    1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTE 73          
The following BLAST results are available for this feature:
BLAST of DN135153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MYBP_MAIZE3.674e-2671.83Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB12_ARATH1.069e-2571.83Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB2_PHYPA4.062e-2565.28Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB86_ARATH2.016e-2466.20Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
ODO1_PETHY4.491e-2463.89Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYBC_MAIZE1.106e-2260.56Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB06_ANTMA1.106e-2261.11Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB39_ARATH1.887e-2264.38Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB5_ARATH9.365e-2263.24Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
RAX2_ARATH3.559e-2158.90Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionwca07a04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07a04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135153 ID=DN135153; Name=DN135153; organism=Citrus sinensis; type=EST; length=419bp
GGGGATATAACGATCGNNNNTCTTGCCTTCTCTCTCCCTCTCTCTCTCTC
TCTCTCTCTTCAGATAAATGACAAGTCCCCATCTCTCGTGTTAAAAAAAC
TCTTTTACAAAACGAACCGAACCCATCTCTCTTTTTCTTCATTACATGTT
GAGAAAAATTTAAAACAAAACTCAACTCTTCATCGTCATCATAAACAAGA
ACATGGGACGTTCGCCTTGCTGTGAAAAGGCTCATACAAACAAAGGAGCT
TGGACCAAAGAGGAAGACCAAAGGCTTATCGATTACATTCGTGCTCATGG
CGAAGGCTGCTGGCGCTCTCTCCCCAAAGCTGCCGGATTGCTAAGATGCG
GCAAGAGTTGTAGATTGAGATGGATAAACTATCTACGCCCTGATCTTNAG
CGTGGGAATTTTACCGATG
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