DN135153

Overview
NameDN135153
Unique NameDN135153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135153_ssr38 microsatellite DN135153_ssr38:38..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5694 contig Csv1_Contig5694:1..419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.013e-20
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGC-WRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGR+PCC+K    +G W+ EED +L DYI  +G G  W S P  AGL RCGKSCRLRW+NYLRP++  G+F++
Sbjct:    1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSE 73          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            M R PC EK    +G WT+EEDQ+L  Y+  +G   WR +PK AGL RCGKSCRLRW+NYLRPDL +G  T+
Sbjct:    1 MERQPCREKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTE 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.145e-19
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGC-WRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGR+PCC+KA+  KG W+ EED +L  YI   G G  W +LP+  GL RCGKSCRLRW+NYLRP++  G F++
Sbjct:    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSE 73          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.550e-19
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  203 MGRSPC-CEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            M + PC  +     KG WT EED  LI+YI  HGEG W SL ++AGL R GKSCRLRW+NYLRPD+ RGN T
Sbjct:    1 MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNIT 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.350e-19
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  206 GRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            G S    +A   KG WT EED  LI+YI  HG+G W SL K+AGL R GKSCRLRW+NYLRPD+ RGN T
Sbjct:   10 GGSGSSAEAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNIT 79          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.421e-19
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            KG WT EED+ L+DY+R HG+G W  + K  GL RCGKSCRLRW+NYL P++ RGNFTD
Sbjct:   14 KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTD 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            KG WT EED+ L+DY++AHG+G W  + K  GL RCGKSCRLRW+NYL P++ RGNFT+
Sbjct:   18 KGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTE 76          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  203 MGR--SPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            MGR  S    +    KG W+ EED++L ++I  HG GCW S+P+ A L RCGKSCRLRWINYLRPDL RG F+
Sbjct:    1 MGRPSSGAVGQPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFS 73          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  239 NKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            N+GAWT  ED+ L DYI  HGEG W +LP  AGL RCGKSCRLRW NYLRP + RGN +
Sbjct:   15 NRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNIS 73          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            KG W+ EED +L+ Y+ ++G+GCW  + K AGL RCGKSCRLRWINYLRPDL RG F+
Sbjct:   20 KGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFS 77          
The following BLAST results are available for this feature:
BLAST of DN135153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RAX1_ARATH3.013e-2056.16Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
MYB15_ANTMA8.766e-2058.33Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
RAX3_ARATH1.145e-1956.16Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
MYB05_ANTMA2.550e-1959.72Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH4.350e-1961.43Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB23_ARATH7.421e-1964.41Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
WER_ARATH2.159e-1862.71Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB3_HORVU2.820e-1857.53Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
TT2_ARATH4.810e-1866.10Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB46_ARATH4.810e-1863.79Transcription factor MYB46 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionwca07a04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07a04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135153 ID=DN135153; Name=DN135153; organism=Citrus sinensis; type=EST; length=419bp
GGGGATATAACGATCGNNNNTCTTGCCTTCTCTCTCCCTCTCTCTCTCTC
TCTCTCTCTTCAGATAAATGACAAGTCCCCATCTCTCGTGTTAAAAAAAC
TCTTTTACAAAACGAACCGAACCCATCTCTCTTTTTCTTCATTACATGTT
GAGAAAAATTTAAAACAAAACTCAACTCTTCATCGTCATCATAAACAAGA
ACATGGGACGTTCGCCTTGCTGTGAAAAGGCTCATACAAACAAAGGAGCT
TGGACCAAAGAGGAAGACCAAAGGCTTATCGATTACATTCGTGCTCATGG
CGAAGGCTGCTGGCGCTCTCTCCCCAAAGCTGCCGGATTGCTAAGATGCG
GCAAGAGTTGTAGATTGAGATGGATAAACTATCTACGCCCTGATCTTNAG
CGTGGGAATTTTACCGATG
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