DN135153

Overview
NameDN135153
Unique NameDN135153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135153_ssr38 microsatellite DN135153_ssr38:38..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5694 contig Csv1_Contig5694:1..419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  203 MGRSPC-CEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            M + PC        KG WT EED  LI++I  HGEG W ++ ++AGL R GKSCRLRW+NYLRPD+ RGN T
Sbjct:    1 MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNIT 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.071e-17
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            KG WT  ED  L+DY++ HGEG W ++ K  GL RCGKSCRLRW N+LRP+L +G FT
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFT 99          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.071e-17
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            KG WT  ED  L+DY++ HGEG W ++ K  GL RCGKSCRLRW N+LRP+L +G FT
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFT 99          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  224 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            E     KG WT EED  L+DY+  HG G W  + +  GL RCGKSCRLRW+NYL P++ +GNFT+
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTE 74          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  224 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            E     KG WT EED  L+DY+  HG G W  + +  GL RCGKSCRLRW+NYL P++ +GNFT+
Sbjct:   10 ENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTE 74          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            KGAWT EED  L   I  +GEG W  +P  AGL RC KSCRLRW+NYL+P + RG F+
Sbjct:   10 KGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFS 67          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            KGAWT EED  L   I  +GEG W  +P  AGL RC KSCRLRW+NYL+P + RG  +
Sbjct:   10 KGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLS 67          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 2
Query:  227 KAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            K++  +G W  EED  L  Y+  HGEG W  + + +GL R GKSCRLRW NYLRP++ RG+ +
Sbjct:    9 KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMS 71          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXR 403
            KG W+ EED++L  +I ++G  CW ++P  AGL R GKSCRLRWINYLRP L R
Sbjct:   12 KGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKR 65          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            KGAWT EED  L   I  +GEG W  +P  AGL RC KSCRLRW+NYL+P + RG  ++
Sbjct:   10 KGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSN 68          
The following BLAST results are available for this feature:
BLAST of DN135153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MYB40_ANTMA4.810e-1855.56Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
GAM1_ORYSJ9.071e-1760.34Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI9.071e-1760.34Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GL1_ARATH2.639e-1653.85Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY2.639e-1653.85Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MY114_ARATH2.470e-1458.62Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB75_ARATH7.187e-1456.90Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB82_ARATH1.226e-1349.21Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
LAF1_ARATH1.226e-1359.26Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB90_ARATH2.731e-1355.93Transcription factor MYB90 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionwca07a04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07a04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135153 ID=DN135153; Name=DN135153; organism=Citrus sinensis; type=EST; length=419bp
GGGGATATAACGATCGNNNNTCTTGCCTTCTCTCTCCCTCTCTCTCTCTC
TCTCTCTCTTCAGATAAATGACAAGTCCCCATCTCTCGTGTTAAAAAAAC
TCTTTTACAAAACGAACCGAACCCATCTCTCTTTTTCTTCATTACATGTT
GAGAAAAATTTAAAACAAAACTCAACTCTTCATCGTCATCATAAACAAGA
ACATGGGACGTTCGCCTTGCTGTGAAAAGGCTCATACAAACAAAGGAGCT
TGGACCAAAGAGGAAGACCAAAGGCTTATCGATTACATTCGTGCTCATGG
CGAAGGCTGCTGGCGCTCTCTCCCCAAAGCTGCCGGATTGCTAAGATGCG
GCAAGAGTTGTAGATTGAGATGGATAAACTATCTACGCCCTGATCTTNAG
CGTGGGAATTTTACCGATG
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