DN135153

Overview
NameDN135153
Unique NameDN135153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135153_ssr38 microsatellite DN135153_ssr38:38..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5694 contig Csv1_Contig5694:1..419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 35/68 (51.47%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRG 406
            MG SP        KG WT EED  L   I  +GEG W  +P   GL RC KSCRLRW+NYL+P + RG
Sbjct:    1 MGESP----KGLRKGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRG 64          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            KG WT++ED  L++++   G+  W  + K +GL R GKSCRLRW+NYL P L RG  T
Sbjct:    9 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMT 66          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            KG WT++ED +L+  +R  GE  W  + K +GL R GKSCRLRW+NYL P L RG  +
Sbjct:   10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMS 67          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            KG WT++ED  L++++   G+  W  + K +GL R GKSCRLRW+NYL P L RG  T
Sbjct:   10 KGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMT 67          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 2
Query:  242 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            KG WT++ED +L+  +R  G+  W  + K +GL R GKSCRLRW+NYL P L  G  +
Sbjct:   10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMS 67          
The following BLAST results are available for this feature:
BLAST of DN135153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MY113_ARATH1.770e-1251.47Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYB48_ARATH5.151e-1250.00Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ6.727e-1251.72Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYB59_ARATH6.727e-1250.00Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYBA1_ORYSJ7.438e-1148.28Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionwca07a04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07a04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135153 ID=DN135153; Name=DN135153; organism=Citrus sinensis; type=EST; length=419bp
GGGGATATAACGATCGNNNNTCTTGCCTTCTCTCTCCCTCTCTCTCTCTC
TCTCTCTCTTCAGATAAATGACAAGTCCCCATCTCTCGTGTTAAAAAAAC
TCTTTTACAAAACGAACCGAACCCATCTCTCTTTTTCTTCATTACATGTT
GAGAAAAATTTAAAACAAAACTCAACTCTTCATCGTCATCATAAACAAGA
ACATGGGACGTTCGCCTTGCTGTGAAAAGGCTCATACAAACAAAGGAGCT
TGGACCAAAGAGGAAGACCAAAGGCTTATCGATTACATTCGTGCTCATGG
CGAAGGCTGCTGGCGCTCTCTCCCCAAAGCTGCCGGATTGCTAAGATGCG
GCAAGAGTTGTAGATTGAGATGGATAAACTATCTACGCCCTGATCTTNAG
CGTGGGAATTTTACCGATG
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