DN135142

Overview
NameDN135142
Unique NameDN135142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_HUMAN (40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_BOVIN (40S ribosomal protein S27 OS=Bos taurus GN=RPS27 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27L_RAT (40S ribosomal protein S27-like protein OS=Rattus norvegicus GN=Rps27l PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27L_MOUSE (40S ribosomal protein S27-like protein OS=Mus musculus GN=Rps27l PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27L_HUMAN (40S ribosomal protein S27-like protein OS=Homo sapiens GN=RPS27L PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27L_BOVIN (40S ribosomal protein S27-like protein OS=Bos taurus GN=RPS27L PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            TTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   44 TTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.672e-13
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 213
            TTVFSHSQTVV+CG+C SVLC PTG   RLTEGCSFRRK D
Sbjct:   46 TTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_HOMAM (40S ribosomal protein S27 OS=Homarus americanus GN=RPS27 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.963e-11
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            +TVFSH+QTVV C  C +VLCQPTGG+A+LT+GCSFR+K
Sbjct:   44 STVFSHAQTVVACVGCATVLCQPTGGKAKLTDGCSFRKK 82          
BLAST of DN135142 vs. ExPASy Swiss-Prot
Match: RS27_CAEEL (40S ribosomal protein S27 OS=Caenorhabditis elegans GN=rps-27 PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   91 TTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 207
            +TVFSH+ TVVVC  C +VLCQPT G+A+LTEGCSFR+K
Sbjct:   44 STVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKK 82          
The following BLAST results are available for this feature:
BLAST of DN135142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS27_HUMAN3.577e-1382.0540S ribosomal protein S27 OS=Homo sapiens GN=RPS27... [more]
RS27_BOVIN3.577e-1382.0540S ribosomal protein S27 OS=Bos taurus GN=RPS27 P... [more]
RS27L_RAT3.577e-1382.0540S ribosomal protein S27-like protein OS=Rattus n... [more]
RS27L_MOUSE3.577e-1382.0540S ribosomal protein S27-like protein OS=Mus musc... [more]
RS27L_HUMAN3.577e-1382.0540S ribosomal protein S27-like protein OS=Homo sap... [more]
RS27L_BOVIN3.577e-1382.0540S ribosomal protein S27-like protein OS=Bos taur... [more]
RS27_CHLRE4.672e-1380.4940S ribosomal protein S27 OS=Chlamydomonas reinhar... [more]
RS27_HOMAM1.963e-1171.7940S ribosomal protein S27 OS=Homarus americanus GN... [more]
RS27_CAEEL9.741e-1171.7940S ribosomal protein S27 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionwca06h04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06h04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135142 ID=DN135142; Name=DN135142; organism=Citrus sinensis; type=EST; length=391bp
GGGTAAGTTTNTTGANNNNTTATTTATATTTTCATTTAAATTTATAAATA
GATATTGATTTTCCTATTTGGTTTGTCTGTAAATTTCAAAACAACTGTTT
TCAGCCACTCTCAAACTGTGGTGGTTTGTGGCAACTGCCAGTCCGTTCTA
TGCCAGCCCACTGGTGGACGTGCCAGACTCACTGAGGGATGTTCTTTCCG
GAGAAAGGGTGACTAAGTGCTACTAAATGATGGAAGAATTTTGTCACATC
CTTTCTTTTTTCCCCCTTTTTCCTCTTTTGTTATGATGTATTAATTTTGA
TATAACTTATGGTGTGGTTGATCTTATGTTTGAAAGATTATATTTCTAAG
TGAATTTTTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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