DN135126

Overview
NameDN135126
Unique NameDN135126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2919 contig Csv1_Contig2919:612..1314. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_POPTR (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Populus trichocarpa GN=ndhH PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.122e-106
Identity = 183/200 (91.50%), Postives = 194/200 (97.00%), Query Frame = 3 
Query:  102 MSILATEKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            M++ AT K+  FMIVNMGPHHPSMHGVLRLI++LDGEDVIDCEPILG+LHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAIT+NGPEQLGNI+VPKRASYIRVIMLELSRIASHLLWLGPFMADIG QTPFFYIFREREL+YDLFEAATGMRMMHNYFRIGGVAADLP+GW+DKCLDFCDYFLTGVAEYQK ITRNPI
Sbjct:    1 MNVPATRKD--FMIVNMGPHHPSMHGVLRLILSLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGGQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWLDKCLDFCDYFLTGVAEYQKLITRNPI 198
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_POPAL (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Populus alba GN=ndhH PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.122e-106
Identity = 183/200 (91.50%), Postives = 194/200 (97.00%), Query Frame = 3 
Query:  102 MSILATEKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            M++ AT K+  FMIVNMGPHHPSMHGVLRLI++LDGEDVIDCEPILG+LHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAIT+NGPEQLGNI+VPKRASYIRVIMLELSRIASHLLWLGPFMADIG QTPFFYIFREREL+YDLFEAATGMRMMHNYFRIGGVAADLP+GW+DKCLDFCDYFLTGVAEYQK ITRNPI
Sbjct:    1 MNVPATRKD--FMIVNMGPHHPSMHGVLRLILSLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGGQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPHGWLDKCLDFCDYFLTGVAEYQKLITRNPI 198
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_OENPA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Oenothera parviflora GN=ndhH PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.122e-106
Identity = 181/195 (92.82%), Postives = 189/195 (96.92%), Query Frame = 3 
Query:  117 TEKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            T   K+ MIVNMGPHHPSMHGVLRLI+TLDGEDVIDCEPILG+LHRGMEKIAENRT+IQYLPYVTRWDYLATMFTEAIT+NGPEQLGNI+VPKRASYIR+IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT V+EYQK ITRNPI
Sbjct:    4 TTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTAVSEYQKLITRNPI 198
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_OENGL (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Oenothera glazioviana GN=ndhH PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.122e-106
Identity = 181/195 (92.82%), Postives = 189/195 (96.92%), Query Frame = 3 
Query:  117 TEKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            T   K+ MIVNMGPHHPSMHGVLRLI+TLDGEDVIDCEPILG+LHRGMEKIAENRT+IQYLPYVTRWDYLATMFTEAIT+NGPEQLGNI+VPKRASYIR+IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT V+EYQK ITRNPI
Sbjct:    4 TTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTAVSEYQKLITRNPI 198
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_OENEH (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhH PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.122e-106
Identity = 181/195 (92.82%), Postives = 189/195 (96.92%), Query Frame = 3 
Query:  117 TEKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            T   K+ MIVNMGPHHPSMHGVLRLI+TLDGEDVIDCEPILG+LHRGMEKIAENRT+IQYLPYVTRWDYLATMFTEAIT+NGPEQLGNI+VPKRASYIR+IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT V+EYQK ITRNPI
Sbjct:    4 TTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTAVSEYQKLITRNPI 198
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_OENBI (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Oenothera biennis GN=ndhH PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.122e-106
Identity = 181/195 (92.82%), Postives = 189/195 (96.92%), Query Frame = 3 
Query:  117 TEKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            T   K+ MIVNMGPHHPSMHGVLRLI+TLDGEDVIDCEPILG+LHRGMEKIAENRT+IQYLPYVTRWDYLATMFTEAIT+NGPEQLGNI+VPKRASYIR+IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT V+EYQK ITRNPI
Sbjct:    4 TTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTAVSEYQKLITRNPI 198
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_OENAR (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Oenothera argillicola GN=ndhH PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.122e-106
Identity = 181/195 (92.82%), Postives = 189/195 (96.92%), Query Frame = 3 
Query:  117 TEKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            T   K+ MIVNMGPHHPSMHGVLRLI+TLDGEDVIDCEPILG+LHRGMEKIAENRT+IQYLPYVTRWDYLATMFTEAIT+NGPEQLGNI+VPKRASYIR+IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLT V+EYQK ITRNPI
Sbjct:    4 TTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTAVSEYQKLITRNPI 198
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_ATRBE (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Atropa belladonna GN=ndhH PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.122e-106
Identity = 181/191 (94.76%), Postives = 188/191 (98.43%), Query Frame = 3 
Query:  129 KEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            K+ MIVNMGP HPSMHGVLRLIVTLDGEDV+DCEPILG+LHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAIT+NGPEQLGNI+VPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL+YDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTG+AEYQK ITRNPI
Sbjct:    8 KDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGIAEYQKLITRNPI 198
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_VITVI (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Vitis vinifera GN=ndhH PE=3 SV=1)

HSP 1 Score: 384.03 bits (985), Expect = 4.077e-106
Identity = 186/200 (93.00%), Postives = 193/200 (96.50%), Query Frame = 3 
Query:  102 MSILATEKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            M++ AT ++   MIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILG+LHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVN PEQLGNI+VPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLP+GWIDKCLDFCDYFLTGVAEYQK ITRNPI
Sbjct:    1 MNVPATRED--LMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPHGWIDKCLDFCDYFLTGVAEYQKLITRNPI 198
[Close]
BLAST of DN135126 vs. ExPASy Swiss-Prot
Match: NDHH_SOLBU (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Solanum bulbocastanum GN=ndhH PE=3 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 5.325e-106
Identity = 182/196 (92.86%), Postives = 189/196 (96.43%), Query Frame = 3 
Query:  114 ATEKEKEFMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGHLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGNIRVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKXITRNPI 701
            A    K+ MIVNMGP HPSMHGVLRLIVTLDGEDV+DCEPILG+LHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAIT+NGPEQLGNI+VPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL+YDLFEAATGMRMMHN+FRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQK ITRNPI
Sbjct:    3 APTTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNFFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPI 198
The following BLAST results are available for this feature:
BLAST of DN135126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDHH_POPTR3.122e-10691.50NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_POPAL3.122e-10691.50NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_OENPA3.122e-10692.82NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_OENGL3.122e-10692.82NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_OENEH3.122e-10692.82NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_OENBI3.122e-10692.82NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_OENAR3.122e-10692.82NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_ATRBE3.122e-10694.76NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_VITVI4.077e-10693.00NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]
NDHH_SOLBU5.325e-10692.86NAD(P)H-quinone oxidoreductase subunit H, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca06f03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06f03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135126 ID=DN135126; Name=DN135126; organism=Citrus sinensis; type=EST; length=703bp
GGGGAAATTTGAAAAANNNNTTCGAATTATTTGATTTTGACTGTTGATGA
ACTTCTTGTTGTTTTCAACAATTCATGTAAGAATGAATCGAGGAAAAACC
TATGAGTATACTAGCTACAGAAAAAGAAAAAGAATTTATGATAGTCAATA
TGGGACCTCACCACCCGTCAATGCATGGGGTTCTTCGTCTCATCGTTACT
CTAGACGGTGAAGATGTTATTGACTGTGAACCAATATTGGGTCATTTACA
CAGAGGGATGGAAAAAATTGCGGAAAACCGAACAATTATACAATATCTGC
CTTATGTAACCCGTTGGGATTATTTAGCTACTATGTTCACAGAAGCAATA
ACTGTAAATGGACCAGAACAGTTGGGAAATATTCGCGTACCTAAAAGGGC
CAGCTATATCAGAGTAATTATGTTGGAGTTGAGTCGTATAGCTTCCCATC
TGTTATGGCTTGGCCCTTTTATGGCAGATATTGGTGCACAGACTCCTTTC
TTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTGTTCGAAGCTGC
CACCGGTATGAGAATGATGCATAATTATTTTCGTATCGGAGGAGTAGCAG
CTGATTTACCCTATGGTTGGATAGATAAATGTTTGGATTTCTGCGATTAT
TTTTTAACAGGGGTTGCTGAATATCAAAAACNNATTACGCGAAACCCCAT
TTT
back to top