DN135111

Overview
NameDN135111
Unique NameDN135111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.299e-26
Identity = 51/78 (65.38%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            P++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RV  GGH +QIYA
Sbjct:    6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 115.546 bits (288), Expect = 8.299e-26
Identity = 51/78 (65.38%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            P++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RV  GGH +QIYA
Sbjct:    6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 115.546 bits (288), Expect = 8.299e-26
Identity = 51/78 (65.38%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            P++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RV  GGH +QIYA
Sbjct:    6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.299e-26
Identity = 51/78 (65.38%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            P++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RV  GGH +QIYA
Sbjct:    6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.299e-26
Identity = 51/78 (65.38%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            P++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGVD+R+RV  GGH +QIYA
Sbjct:    6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.154e-25
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            P++SVQ FGRKKTA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RFAGVD+R+RV  GGH +Q+YA
Sbjct:    6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.154e-25
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            P++SVQ FGRKKTA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RFAGVD+R+RV  GGH +Q+YA
Sbjct:    6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.175e-25
Identity = 47/82 (57.32%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   82 AKAXPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            A+  P+++VQ FGRKKTA AV YCKRG G++++NG P++LVEP +L++K  EPILLLG+ +F+GVD+R+ V  GGH +Q+YA
Sbjct:    7 ARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYA 88          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_SCHPO (40S ribosomal protein S16 OS=Schizosaccharomyces pombe GN=rps16a PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.565e-24
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            ++SVQCFG+K  A AV +CK G+GLIK+NG P+ LV+PEILR K YEPIL+ G  +FAGVD+R+RV  GGH SQIYA
Sbjct:    1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYA 77          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.767e-24
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            V+SVQ FGRKKTA AV +CK+G+GLIK+NG P+E +EP+ILR K  EP+LL+G+ RF  VD+RIRV  GGH +QIYA
Sbjct:    5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYA 81          
The following BLAST results are available for this feature:
BLAST of DN135111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS16_RAT8.299e-2665.3840S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]
RS16_PIG8.299e-2665.3840S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]
RS16_MOUSE8.299e-2665.3840S ribosomal protein S16 OS=Mus musculus GN=Rps16... [more]
RS16_HUMAN8.299e-2665.3840S ribosomal protein S16 OS=Homo sapiens GN=RPS16... [more]
RS16_BOVIN8.299e-2665.3840S ribosomal protein S16 OS=Bos taurus GN=RPS16 P... [more]
RS16_ICTPU3.154e-2564.1040S ribosomal protein S16 OS=Ictalurus punctatus G... [more]
RS16_HETFO3.154e-2564.1040S ribosomal protein S16 OS=Heteropneustes fossil... [more]
RS16_SPOFR9.175e-2557.3240S ribosomal protein S16 OS=Spodoptera frugiperda... [more]
RS16_SCHPO1.565e-2464.9440S ribosomal protein S16 OS=Schizosaccharomyces p... [more]
RS16_CAEEL7.767e-2464.9440S ribosomal protein S16 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionwca06d05 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06d05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135111 ID=DN135111; Name=DN135111; organism=Citrus sinensis; type=EST; length=329bp
GGGGACCGGTAGTCATTTNANNNTTTCTCTGTGTGTTGCGCGCGCTTCCC
TCATAGCAAACCCTAACAAAAAATGGCGACAGCAAAAGCANGTCCAGTGG
AATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTTAC
TGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAGTT
AGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTTGC
TCGGGCGACACCGCTTCGCCGGCGTGGACATGAGAATCCGCGTGAANNGC
GGGGGACACACGTCGCAGATCTACGCCAT
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