DN135111

Overview
NameDN135111
Unique NameDN135111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1829 contig Csv1_Contig1829:1..329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_CANGA (40S ribosomal protein S16 OS=Candida glabrata GN=RPS16 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.014e-23
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK YEP+LL+G  +FA +D+R+RV  GGH SQ+YA
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYA 80          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_YEAST (40S ribosomal protein S16 OS=Saccharomyces cerevisiae GN=RPS16A PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.260e-23
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK YEP+LL+G  +F+ +D+R+RV  GGH SQ+YA
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYA 80          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_ASHGO (40S ribosomal protein S16 OS=Ashbya gossypii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.260e-23
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +FA +D+R+RV  GGH SQ+YA
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYA 80          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_SACEX (40S ribosomal protein S16 OS=Saccharomyces exiguus GN=RPS16 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.035e-23
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +F  +D+R+RV  GGH SQ+YA
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLLLVGLDKFTNIDIRVRVTGGGHVSQVYA 80          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_KLULA (40S ribosomal protein S16 OS=Kluyveromyces lactis GN=RPS16 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.035e-23
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            V SVQ FG+KK+A AV + K G+GLIK+NG PI LV+PEILRFK YEP+LL+G  +FA +D+R++V  GGH SQ+YA
Sbjct:    4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVKVTGGGHVSQVYA 80          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.035e-23
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  100 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            +SVQ FG+KKTA AV + K G+GLIKING PI LV+PEILRFK YEP+ L+G  +F G+D+R++V  GGH SQ+YA
Sbjct:    4 QSVQTFGKKKTATAVAHVKAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIRVKVTGGGHVSQVYA 79          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_DEBHA (40S ribosomal protein S16 OS=Debaryomyces hansenii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.262e-22
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:  103 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            SVQ FG+KKTA AV + K G+GLIK+NG PI LV+PEILRFK YEP+ L+G  +F  +D+R++V  GGH SQ+YA
Sbjct:    5 SVQTFGKKKTATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLTLVGLDKFQNIDIRVKVSGGGHVSQVYA 79          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_NEUCR (40S ribosomal protein S16 OS=Neurospora crassa GN=rps-16 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.712e-21
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  100 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            ++VQ FG+KK A AV  C +G+GLIK+NG P++L  PEILR K YEPILLLG  +FA VD+R++V  GGH SQ+YA
Sbjct:    4 QAVQVFGKKKNATAVARCVQGKGLIKVNGVPLKLYAPEILRAKLYEPILLLGTDKFAEVDIRLKVSGGGHVSQVYA 79          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.791e-20
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1
Query:  166 GLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            GLIKING PIELVEPEILRFKA+EPILLLG+ RFAGVDMRIRV  GGHTSQIYA
Sbjct:   29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYA 82          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_DICDI (40S ribosomal protein S16 OS=Dictyostelium discoideum GN=rps16 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.734e-18
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   79 TAKAXPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            +A A     VQ  G+K+TAVAV Y   G+GLIK+NG P+E ++P+ L+ K YEP+L++G+  F+ VD+R+RV  GG  +QIYA
Sbjct:    2 SAVAPQKNVVQTHGKKRTAVAVAYATNGKGLIKVNGVPLEFIQPKNLKLKVYEPVLIVGKDVFSQVDIRVRVRGGGSVAQIYA 84          
The following BLAST results are available for this feature:
BLAST of DN135111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS16_CANGA1.014e-2364.9440S ribosomal protein S16 OS=Candida glabrata GN=R... [more]
RS16_YEAST2.260e-2363.6440S ribosomal protein S16 OS=Saccharomyces cerevis... [more]
RS16_ASHGO2.260e-2363.6440S ribosomal protein S16 OS=Ashbya gossypii GN=RP... [more]
RS16_SACEX5.035e-2362.3440S ribosomal protein S16 OS=Saccharomyces exiguus... [more]
RS16_KLULA5.035e-2362.3440S ribosomal protein S16 OS=Kluyveromyces lactis ... [more]
RS16_CANAL5.035e-2363.1640S ribosomal protein S16 OS=Candida albicans GN=R... [more]
RS16_DEBHA4.262e-2261.3340S ribosomal protein S16 OS=Debaryomyces hansenii... [more]
RS16_NEUCR4.712e-2160.5340S ribosomal protein S16 OS=Neurospora crassa GN=... [more]
RS16_LUPPO1.791e-2088.8940S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_DICDI3.734e-1849.4040S ribosomal protein S16 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionwca06d05 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06d05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135111 ID=DN135111; Name=DN135111; organism=Citrus sinensis; type=EST; length=329bp
GGGGACCGGTAGTCATTTNANNNTTTCTCTGTGTGTTGCGCGCGCTTCCC
TCATAGCAAACCCTAACAAAAAATGGCGACAGCAAAAGCANGTCCAGTGG
AATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTTAC
TGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAGTT
AGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTTGC
TCGGGCGACACCGCTTCGCCGGCGTGGACATGAGAATCCGCGTGAANNGC
GGGGGACACACGTCGCAGATCTACGCCAT
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