DN135111

Overview
NameDN135111
Unique NameDN135111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1829 contig Csv1_Contig1829:1..329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS9_PYRHO (30S ribosomal protein S9P OS=Pyrococcus horikoshii GN=rps9p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.908e-12
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:  106 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            +Q  G++KTA+A    + GRG ++ING P+E++EPEI RF   EP++L G   +  VD+ ++V  GG   Q  A
Sbjct:    4 IQTTGKRKTAIARAVIREGRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEA 77
[Close]
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS9_PYRAB (30S ribosomal protein S9P OS=Pyrococcus abyssi GN=rps9p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.908e-12
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:  106 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            +Q  G++KTA+A    + G+G ++ING P+ELVEPEI RF   EP++L G   +  VD+ ++V  GG   Q  A
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEA 77
[Close]
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS9_PYRFU (30S ribosomal protein S9P OS=Pyrococcus furiosus GN=rps9p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.984e-11
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:  106 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            +Q  G++KTA+A    + G+G ++ING P+E++EPEI RF   EP++L G   +  VD+ ++V  GG   Q  A
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEA 77
The following BLAST results are available for this feature:
BLAST of DN135111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS9_PYRHO8.908e-1241.8930S ribosomal protein S9P OS=Pyrococcus horikoshii... [more]
RS9_PYRAB8.908e-1243.2430S ribosomal protein S9P OS=Pyrococcus abyssi GN=... [more]
RS9_PYRFU1.984e-1140.5430S ribosomal protein S9P OS=Pyrococcus furiosus G... [more]

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Properties
Property NameValue
Genbank descriptionwca06d05 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06d05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135111 ID=DN135111; Name=DN135111; organism=Citrus sinensis; type=EST; length=329bp
GGGGACCGGTAGTCATTTNANNNTTTCTCTGTGTGTTGCGCGCGCTTCCC
TCATAGCAAACCCTAACAAAAAATGGCGACAGCAAAAGCANGTCCAGTGG
AATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTTAC
TGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAGTT
AGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTTGC
TCGGGCGACACCGCTTCGCCGGCGTGGACATGAGAATCCGCGTGAANNGC
GGGGGACACACGTCGCAGATCTACGCCAT
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