DN135096

Overview
NameDN135096
Unique NameDN135096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4631 contig Csv1_Contig4631:70..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_PICGU (Probable proteasome subunit beta type-2 OS=Pichia guilliermondii GN=PRO2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.462e-30
Identity = 70/156 (44.87%), Postives = 98/156 (62.82%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            M+ V G+  +  T++    +A   I VLK  +DK   L+SH L+A SGE GD VQF E+IQ N  LY  R N   L+  A A+F R +LAT++R + PY VN+LLAGYD  TG PSL +IDY+ T  ++  AA GY  ++  S++D+H+  GM+ E
Sbjct:    1 MDIVLGIRVEDCTLVATSKAATRGISVLKDTDDKTRQLNSHNLMAYSGEAGDTVQFAEYIQANTQLYTMRENDTELSPKATASFVRNQLATSIRSRKPYQVNVLLAGYDTNTGKPSLNWIDYLGTQVELPYAAHGYAGFYCTSLLDKHYKKGMNFE 156          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_CRYNE (Probable proteasome subunit beta type-2 OS=Cryptococcus neoformans GN=CPR1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.596e-29
Identity = 70/152 (46.05%), Postives = 94/152 (61.84%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGM 503
            MEC FG+ G  + IL +D  A  SI+ +KS+E+K+  L  H  +A SGEPGD   F E+I++N+ LY  RN  PL   AA+ + R  LA A+R + PY VN+LL G+D  T  P LY+IDY+ T   V  AA G G Y SLS MD+ ++  M
Sbjct:    1 MECSFGITGKDYVILASDMGAGRSIVRMKSDENKLKTLGPHLAMAFSGEPGDTNNFAEYIERNMRLYNIRNHFPLLPPAASAWVRRTLAEAIRSRHPYAVNLLLGGFDTTTSKPHLYWIDYLGTKAIVPYAAHGMGVYVSLSTMDKWWYEDM 152          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_YEAST (Proteasome component C11 OS=Saccharomyces cerevisiae GN=PRE1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.817e-26
Identity = 59/155 (38.06%), Postives = 90/155 (58.06%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            M+ + G+      IL +  +    I VLK ++DK   L  H L++ +GE GD VQF E+IQ N+ LY  R    L+  A ++F R ELA ++R + PY VN+L+ GYDK+   P LY IDY+ T  ++   A GY  +++ S++D H+   M+ E
Sbjct:    1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTE 155          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_DROME (Probable proteasome subunit beta type-2 OS=Drosophila melanogaster GN=Prosbeta4R2 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.398e-25
Identity = 60/154 (38.96%), Postives = 93/154 (60.39%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            ME + G+ G  F +L +DT    S++ +K ++ KI  L    ++A  G+ GD +QFT+FI KN+ LY+  +G  L+  +AA+FTR  LA  +R  + Y V +LLAGYD   GP L+YID       ++ A  G+GS F  S++ R+++S +S E
Sbjct:    3 METILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVGDGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRYQVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWNSKLSQE 156          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_TRYBB (Proteasome subunit beta type-2 OS=Trypanosoma brucei brucei GN=PSB4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.776e-20
Identity = 59/163 (36.20%), Postives = 87/163 (53.37%), Query Frame = 3
Query:   57 ECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALRKSP--YMVNILLAGY--------DKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            E   G     F ++ A        + +   EDKI  LDSHK++A +GE G R  F E+++ N++L + R +G  ++T A A+F R  LA ALR     Y VN LLAG+        D  TG  LYY+DY+ TL +V     GYG+ F  +M+DR +   ++ +
Sbjct:    3 ETTIGFRCQDFVLVAAAGLNAFYYIKITDTEDKITELDSHKVVACAGENGPRTHFVEYVKCNMALKKMREHGRMISTHATASFMRNTLAGALRSRDGLYPVNCLLAGFDVPASAEDDVATGAHLYYLDYLGTLQEVPYGCHGYGAPFVTAMLDRMWRPNLTAQ 165          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_ENCCU (Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi GN=PRE1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.571e-13
Identity = 40/153 (26.14%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            M+   G+ G  F I+ ADT    SILV+K N +K  V+    ++A +G  GD  +   ++ ++    + +NGI L+ +  A+  + ++  +LR+    ++ ++AG   E    L+ +D    +  V   A GY +YF   ++DR +   ++++
Sbjct:    1 MDSSIGIKGRNFAIVAADTKISSSILVVKENHEKFQVIKDRIVMAMTGNQGDAFRTMLYVSESALYEEIQNGIELSPSVLAHMIQNKVHESLRRRQLDISSIVAGRGPEK-YDLWSVDKYGAISSVPFCASGYAAYFVYGILDREYSEDITID 152          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 43/147 (29.25%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   69 GLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSV 509
            GLV     +L ADT A    ++   N  KI  +D H  IAG+G+ GD +     ++   +LY+   G  ++  A A      +    +  PY+   L+ GYD++  P L+ +D +  + + + AA G G  F+ S++D  +   MSV
Sbjct:   15 GLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLL-ANILNGSKYFPYLGWFLVGGYDEK--PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSV 158          
The following BLAST results are available for this feature:
BLAST of DN135096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSB2_PICGU2.462e-3044.87Probable proteasome subunit beta type-2 OS=Pichia ... [more]
PSB2_CRYNE1.596e-2946.05Probable proteasome subunit beta type-2 OS=Cryptoc... [more]
PSB2_YEAST2.817e-2638.06Proteasome component C11 OS=Saccharomyces cerevisi... [more]
PSB2_DROME1.398e-2538.96Probable proteasome subunit beta type-2 OS=Drosoph... [more]
PSB2_TRYBB8.776e-2036.20Proteasome subunit beta type-2 OS=Trypanosoma bruc... [more]
PSB2_ENCCU3.571e-1326.14Probable proteasome subunit beta type-2 OS=Encepha... [more]
PSMB_PYRFU2.559e-1129.25Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca06b09 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06b09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135096 ID=DN135096; Name=DN135096; organism=Citrus sinensis; type=EST; length=514bp
GGGGAAAACAAAATCAAATCAAAACAGATCCGACAACANNNNAACAGTAA
GGAATGGAGTGCGTATTTGGTCTTGTCGGCGACGGCTTCACAATCTTAGT
GGCCGACACGTCGGCAGTCCACAGTATCTTGGTTCTTAAATCGAACGAGG
ACAAGATCATGGTCCTCGACTCTCACAAACTCATCGCCGGCAGTGGCGAA
CCCGGTGACCGTGTTCAATTTACGGAGTTCATTCAGAAGAATGTGTCGTT
GTATCAATTTCGTAACGGAATTCCATTGACTACTGCTGCGGCGGCGAACT
TTACCCGAGGAGAGCTTGCTACTGCTCTGAGAAAGAGCCCTTACATGGTT
AACATCCTTCTAGCTGGGTATGACAAGGAGACAGGACCATCTCTCTACTA
CATTGACTACATTGCAACCCTTCACAAAGTTGATAAGGCAGCTTTTGGTT
ATGGATCCTATTTTTCGCTCTCCATGATGGACCGACATTTCCACAGTGGC
ATGTCAGTTGAAGA
back to top