DN135078

Overview
NameDN135078
Unique NameDN135078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:902..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  152 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 382
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD    +A E+ V ++PT +L + G+ ++RIVGAK
Sbjct:  364 LSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAK 441
[Close]
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 2 
Query:  152 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 382
            + + K ++VDF A+WC PCK+++P+L E+A +      V  + VDVD   + A ++ V ++PT +L K+G  ++RIVGAK
Sbjct:   20 LGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGAK 99
The following BLAST results are available for this feature:
BLAST of DN135078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
TRXB_MYCLE8.250e-1139.74Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_MYCSM8.250e-1140.00Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionwca05h03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135078 ID=DN135078; Name=DN135078; organism=Citrus sinensis; type=EST; length=602bp
CGGGCCGGGGGGTCACCAAACACAGAAACAANNNTNNNNAAATCAGAACA
GAGAAGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAA
GTGATCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGG
CATTGCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCC
CGCCATGCAAGCTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTG
CCCGCTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCTGTCGC
TGAGGAATGGGCTGTAGAAGCCATGCCGACCTTTGTACTGACGAAAGAAG
GCAAAGTCCTGGAGAGGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTG
GCTGTCGAAAAGCACGCAACTGTTGAGAATGCAACTACTGCTAATGCTTG
ATTGATGCGTACATGAATCTCACTGGTCTTTTATTGTAAGATGTGTGTTT
GTGGTTGCTTAATGTAAGAATATGGTACCATGTTTAACAGGCCTGTATAT
ATGAATAAATGACAATCTTCTACAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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