DN135078

Overview
NameDN135078
Unique NameDN135078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:902..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 412
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 412
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 412
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 412
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.112e-15
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 412
            A  KL+VVDF+A+WC PCK++ P    L++K   V+F++VDVD+ K +A E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  134 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHA 418
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K++L+  + + A
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA 105          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVL-ERIVGAKKDELQLAVEKH 415
            A  KL+V+DFTASWC PC+ ++P   E+AK+ P VIF KVDVDE    AE   ++AMPTF   K GK L + + GA +  L+  ++K+
Sbjct:   18 AGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  170 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 409
            +V+DF A+WC PCK+M P L++L +  P V F+K DVDE   +A+E  V AMPTFVL K+G+++ +I+GA    L+  ++
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIK 125          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  134 EQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHA 418
            + L+  I   KL+V DF A+WC PCK ++P L  +AK+   VIF+K+DVDE + VAE++ V AMPT ++ K G  +  +VGA +  ++  ++ +A
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELIQANA 107          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   98 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 409
            +V+   + ESWN  + +       IV  FTA WC P   M+    ELA      +FL VDVDE+K VA +  V+AMPTF+  K+G  ++++VGA  DE++  V+
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVD 106          
The following BLAST results are available for this feature:
BLAST of DN135078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
THIO_HUMAN6.522e-1644.19Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_BOVIN6.522e-1643.02Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MACMU8.518e-1643.02Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_CALJA8.518e-1643.02Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_RABIT1.112e-1541.86Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_RAT1.453e-1541.24Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_GEOCY1.453e-1547.73Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
TRX3_YEAST1.898e-1546.25Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
THIO_ECHGR1.898e-1541.05Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRXL4_ARATH2.478e-1539.42Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]

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Properties
Property NameValue
Genbank descriptionwca05h03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135078 ID=DN135078; Name=DN135078; organism=Citrus sinensis; type=EST; length=602bp
CGGGCCGGGGGGTCACCAAACACAGAAACAANNNTNNNNAAATCAGAACA
GAGAAGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAA
GTGATCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGG
CATTGCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCC
CGCCATGCAAGCTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTG
CCCGCTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCTGTCGC
TGAGGAATGGGCTGTAGAAGCCATGCCGACCTTTGTACTGACGAAAGAAG
GCAAAGTCCTGGAGAGGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTG
GCTGTCGAAAAGCACGCAACTGTTGAGAATGCAACTACTGCTAATGCTTG
ATTGATGCGTACATGAATCTCACTGGTCTTTTATTGTAAGATGTGTGTTT
GTGGTTGCTTAATGTAAGAATATGGTACCATGTTTAACAGGCCTGTATAT
ATGAATAAATGACAATCTTCTACAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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