DN135078

Overview
NameDN135078
Unique NameDN135078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:902..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.227e-15
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 409
            A +KL+VVDF+A+WC PCK++ P    L  K   V+F+++DVD+ + VA    V+ MPTF   K GK ++   GA K++L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 102          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.521e-15
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  152 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHA 418
            I+  +L++VDF A WC PCK ++P   E +K    ++F+KVDVDE+  V E+  + +MPTF + K G  ++ ++GA    L+  +EK+A
Sbjct:   15 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.521e-15
Identity = 41/107 (38.32%), Postives = 68/107 (63.55%), Query Frame = 2
Query:   98 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 412
            QVIS   ++ +N+    G    K+I++DF A+WC PC+++SPI  + ++K  A  ++F KVDVD    ++EE  + AMPTF + K+G+ ++ +VGA    L+  V+K
Sbjct:    3 QVIS--NLDEFNKLTNSG----KIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQK 103          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.521e-15
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  131 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 397
            N QL K  A+ KL+V+DF A+WC PCK++SP L+EL+ +    V+ LKVDVDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   12 NGQLTK--ASGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLE 99          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  152 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 409
            +   KL+VVDF A+WC PCK ++P   + +       F+KVDVD+L  +A E  V AMP+F L K G+ +E IVGA   +L+ +++
Sbjct:   15 VCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIK 100          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF-VLTKEGKVLERIVGAKKDELQLAVEK 412
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+VDVD+ + VA E  V+ MPTF    K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATINE 104          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  158 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKHA 418
            A  L++VDF A WC PC++++PIL  LA +LP V   K+++DE    AE + V ++PT +L K+G  + R+VG K K+ L   + KHA
Sbjct:   15 ASGLVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKHA 102          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 34/88 (38.64%), Postives = 61/88 (69.32%), Query Frame = 2
Query:  158 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKHA 418
            A  L+++DF A WC PCK+++P+L  L  ++ +V+  KV++D+  + AE++ V ++PT +L K+GK ++R+VG K KD L   + +H+
Sbjct:   15 ATGLVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQHS 102          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.740e-14
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 409
            A  K +V+D    WC PCK+M+P   ELA+KL  V+FLK+D + E K +A+E  +  +PTF + K GK+++ + GAK D+L  A+E
Sbjct:  101 AGDKPVVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIE 186          
BLAST of DN135078 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  164 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 406
            KL+VVDF A+WC PCK+++P++ + A++     F K+DVDE+  VA++  V +MPT +  K GK + R+VGA    ++ A+
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAI 100          
The following BLAST results are available for this feature:
BLAST of DN135078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
THIO_CHICK4.227e-1541.18Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_PLAF75.521e-1539.33Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO_COPCM5.521e-1538.32Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO2_DROYA5.521e-1546.67Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
TRX1_SCHPO1.230e-1441.86Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_PONAB1.230e-1443.68Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_CHLPN1.606e-1443.18Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO_CHLCV2.098e-1438.64Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRXF_MESCR2.740e-1444.19Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
TRX2_YEAST3.579e-1441.98Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]

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Properties
Property NameValue
Genbank descriptionwca05h03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05h03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135078 ID=DN135078; Name=DN135078; organism=Citrus sinensis; type=EST; length=602bp
CGGGCCGGGGGGTCACCAAACACAGAAACAANNNTNNNNAAATCAGAACA
GAGAAGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAA
GTGATCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGG
CATTGCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCC
CGCCATGCAAGCTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTG
CCCGCTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCTGTCGC
TGAGGAATGGGCTGTAGAAGCCATGCCGACCTTTGTACTGACGAAAGAAG
GCAAAGTCCTGGAGAGGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTG
GCTGTCGAAAAGCACGCAACTGTTGAGAATGCAACTACTGCTAATGCTTG
ATTGATGCGTACATGAATCTCACTGGTCTTTTATTGTAAGATGTGTGTTT
GTGGTTGCTTAATGTAAGAATATGGTACCATGTTTAACAGGCCTGTATAT
ATGAATAAATGACAATCTTCTACAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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